Publications

Coupling between Sequence-Mediated Nucleosome Organization and Genome Evolution: Author(s) : Barbier J, Vaillant C, Volff J, Brunet F, Audit B,; Journal : Genes (Basel); 2021
Clustering of Sex-Biased Genes and Transposable Elements in the Genome of the Medaka Fish Oryzias latipes: Author(s) : Dechaud C, Miyake S, Martinez-Bengochea A, Schartl M, Volff J, Naville M,; Journal : Genome Biol Evol; 2021
Differential expression of transposable elements in the medaka melanoma model: Author(s) : Helmprobst F, Kneitz S, Klotz B, Naville M, Dechaud C, Volff J, Schartl M,; Journal : PLoS One; 2021
Giant Lungfish genome elucidates the conquest of land by vertebrates: Author(s) : Meyer A, Schloissnig S, Franchini P, Du K, Woltering J, Irisarri I, Wong W, Nowoshilow S, Kneitz S, Kawaguchi A, Fabrizius A, Xiong P, Dechaud C, Spaink H, Volff J, Simakov O, Burmester T, Tanaka E, Schartl M,; Journal : Nature; 2021
Transposable element-derived sequences in vertebrate development: Author(s) : Etchegaray E, Naville M, Volff J, Haftek-Terreau Z,; Journal : Mob DNA; 2021
ANISEED 2019: 4D exploration of genetic data for an extended range of tunicates: Author(s) : Dardaillon J, Dauga D, Simion P, Faure E, Onuma T, DeBiasse M, Louis A, Nitta K, Naville M, Besnardeau L, Reeves W, Wang K, Fagotto M, Guéroult-Bellone M, Fujiwara S, Dumollard R, Veeman M, Volff J, Roest Crollius H, Douzery E, Ryan J, Davidson B, Nishida H, Dantec C, Lemaire P,; Journal : Nucleic Acids Res; 2020
Sequencing the Genome of Indian Flying Fox, Natural Reservoir of Nipah Virus, Using Hybrid Assembly and Conservative Secondary Scaffolding: Author(s) : Fouret J, Brunet F, Binet M, Aurine N, Enchéry F, Croze S, Guinier M, Goumaidi A, Preininger D, Volff J, Bailly-Bechet M, Lachuer J, Horvat B, Legras-Lachuer C,; Journal : Front Microbiol; 2020
Contrasting gene decay in subterranean vertebrates: insights from cavefishes and fossorial mammals: Author(s) : Policarpo M, Fumey J, Lafargeas P, Naquin D, Thermes C, Naville M, Dechaud C, Volff J, Cabau C, Klopp C, Møller P, Bernatchez L, García-Machado E, Rétaux S, Casane D,; Journal : Mol Biol Evol; 2020
Sex and the TEs: transposable elements in sexual development and function in animals: Author(s) : Dechaud C, Volff J, Schartl M, Naville M,; Journal : Mobile DNA; 2019
Massive Changes of Genome Size Driven by Expansions of Non-autonomous Transposable Elements: Author(s) : Naville M, Henriet S, Warren I, Sumic S, Reeve M, Volff J, Chourrout D,; Journal : Current Biology; 2019
Developmental and comparative transcriptomic identification of iridophore contribution to white barring in clownfish: Author(s) : Salis P, Lorin T, Lewis V, Rey C, Marcionetti A, Escande M, Roux N, Besseau L, Salamin N, Semon M, Parichy D, Volff J, Laudet V,; Journal : Pigment Cell Melanoma Res; 2019
Evidence for DNA Sequence Encoding of an Accessible Nucleosomal Array across Vertebrates: Author(s) : Brunet F, Audit B, Drillon G, Argoul F, Volff J, Arneodo A,; Journal : Biophys J; 2018
Teleost Fish-Specific Preferential Retention of Pigmentation Gene-Containing Families After Whole Genome Duplications in Vertebrates: Author(s) : Lorin T, Brunet F, Laudet V, Volff J,; Journal : G3 (Bethesda); 2018
LTR-retrotransposon transcriptome modulation in response to endotoxin-induced stress in PBMCs: Author(s) : Mommert M, Tabone O, Oriol G, Cerrato E, Guichard A, Naville M, Fournier P, Volff J, Pachot A, Monneret G, Venet F, Brengel-Pesce K, Textoris J, Mallet F,; Journal : BMC Genomics; 2018
Analysis of the spotted gar genome suggests absence of causative link between ancestral genome duplication and transposable element diversification in teleost fish: Author(s) : Chalopin D, Volff J,; Journal : J Exp Zool B Mol Dev Evol; 2017
piRNAs and their diverse roles: a transposable element-driven tactic for gene regulation?: Author(s) : Sarkar A, Volff J, Vaury C,; Journal : FASEB J; 2017
Expansion by whole genome duplication and evolution of the sox gene family in teleost fish: Author(s) : Voldoire E, Brunet F, Naville M, Volff J, Galiana D,; Journal : PLoS One; 2017
The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons: Author(s) : Braasch I, Gehrke A, Smith J, Kawasaki K, Manousaki T, Pasquier J, Amores A, Desvignes T, Batzel P, Catchen J, Berlin A, Campbell M, Barrell D, Martin K, Mulley J, Ravi V, Lee A, Nakamura T, Chalopin D, Fan S, Wcisel D, Canestro C, Sydes J, Beaudry F, Sun Y, Hertel J, Beam M, Fasold M, Ishiyama M, Johnson J, Kehr S, Lara M, Letaw J, Litman G, Litman R, Mikami M, Ota T, Saha N, Williams L, Stadler P, Wang H, Taylor J, Fontenot Q, Ferrara A, Searle S, Aken B, Yandell M, Schneider I, Yoder J, Volff J, Meyer A, Amemiya C, Venkatesh B, Holland P, Guiguen Y, Bobe J, Shubin N, Di Palma F, Alfoldi J, Lindblad-Toh K, Postlethwait J,; Journal : Nat Genet; 2016
Whole Genome Duplications Shaped the Receptor Tyrosine Kinase Repertoire of Jawed Vertebrates: Author(s) : Brunet F, Volff J, Schartl M,; Journal : Genome Biol Evol; 2016
Evolutionary history of the mammalian synaptonemal complex: Author(s) : Fraune J, Brochier-Armanet C, Alsheimer M, Volff J, Schucker K, Benavente R,; Journal : Chromosoma; 2016
Endogenous Retroviruses in Fish Genomes: From Relics of Past Infections to Evolutionary Innovations?: Author(s) : Naville M, Volff J,; Journal : Front Microbiol; 2016
Not so bad after all: retroviruses and long terminal repeat retrotransposons as a source of new genes in vertebrates: Author(s) : Naville M, Warren I, Haftek-Terreau Z, Chalopin D, Brunet F, Levin P, Galiana D, Volff J,; Journal : Clin Microbiol Infect; 2016
piRNAs and their diverse roles: a transposable element-driven tactic for gene regulation?: Author(s) : Sarkar A, Volff J, Vaury C,; Journal : FASEB J; 2016
X. couchianus and X. hellerii genome models provide genomic variation insight among Xiphophorus species: Author(s) : Shen Y, Chalopin D, Garcia T, Boswell M, Boswell W, Shiryev S, Agarwala R, Volff J, Postlethwait J, Schartl M, Minx P, Warren W, Walter R,; Journal : BMC Genomics; 2016
Comparative analysis of transposable elements highlights mobilome diversity and evolution in vertebrates: Author(s) : Chalopin D, Naville M, Plard F, Galiana D, Volff J,; Journal : Genome Biol Evol; 2015
Transposable elements and early evolution of sex chromosomes in fish: Author(s) : Chalopin D, Volff J, Galiana D, Anderson J, Schartl M,; Journal : Chromosome Res; 2015
Embryonic expression of endogenous retroviral RNAs in somatic tissues adjacent to the Oikopleura germline: Author(s) : Henriet S, Sumic S, Doufoundou-Guilengui C, Jensen M, Grandmougin C, Fal K, Thompson E, Volff J, Chourrout D,; Journal : Nucleic Acids Res; 2015
The coelacanth: Can a "living fossil" have active transposable elements in its genome?: Author(s) : Naville M, Chalopin D, Casane D, Laurenti P, Volff J,; Journal : Mob Genet Elements; 2015
Expression of young HERV-H loci in the course of colorectal carcinoma and correlation with molecular subtypes: Author(s) : Perot P, Mullins C, Naville M, Bressan C, Huhns M, Gock M, Kuhn F, Volff J, Trillet-Lenoir V, Linnebacher M, Mallet F,; Journal : Oncotarget; 2015
Transcriptional control analyses of the Xiphophorus melanoma oncogene: Author(s) : Regneri J, Volff J, Schartl M,; Journal : Comp Biochem Physiol C Toxicol Pharmacol; 2015
Insights into Sex Chromosome Evolution and Aging from the Genome of a Short-Lived Fish: Author(s) : Reichwald K, Petzold A, Koch P, Downie B, Hartmann N, Pietsch S, Baumgart M, Chalopin D, Felder M, Bens M, Sahm A, Szafranski K, Taudien S, Groth M, Arisi I, Weise A, Bhatt S, Sharma V, Kraus J, Schmid F, Priebe S, Liehr T, Gorlach M, Than M, Hiller M, Kestler H, Volff J, Schartl M, Cellerino A, Englert C, Platzer M,; Journal : Cell; 2015
Evolutionary impact of transposable elements on genomic diversity and lineage-specific innovation in vertebrates: Author(s) : Warren I, Naville M, Chalopin D, Levin P, Berger C, Galiana D, Volff J,; Journal : Chromosome Res; 2015
The cavefish genome reveals candidate genes for eye loss: Author(s) : McGaugh S, Gross J, Aken B, Blin M, Borowsky R, Chalopin D, Hinaux H, Jeffery W, Keene A, Ma L, Minx P, Murphy D, O'Quin K, Retaux S, Rohner N, Searle S, Stahl B, Tabin C, Volff J, Yoshizawa M, Warren W,; Journal : Nat Commun; 2014
Interspecies insertion polymorphism analysis reveals recent activity of transposable elements in extant coelacanths: Author(s) : Naville M, Chalopin D, Volff J,; Journal : PLoS One; 2014
High temperature increases the masculinization rate of the all-female (XX) rainbow trout "Mal" population: Author(s) : Valdivia K, Jouanno E, Volff J, Galiana-Arnoux D, Guyomard R, Helary L, Mourot B, Fostier A, Quillet E, Guiguen Y,; Journal : PLoS One; 2014
TOPAZ1, a novel germ cell-specific expressed gene conserved during evolution across vertebrates: Author(s) : Baillet A, Le Bouffant R, Volff J, Luangpraseuth A, Poumerol E, Thepot D, Pailhoux E, Livera G, Cotinot C, Mandon-Pepin B,; Journal : PLoS One; 2011
The vertebrate makorin ubiquitin ligase gene family has been shaped by large-scale duplication and retroposition from an ancestral gonad-specific, maternal-effect gene: Author(s) : Bohne A, Darras A, D'Cotta H, Baroiller J, Galiana-Arnoux D, Volff J,; Journal : BMC Genomics; 2010
Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate: Author(s) : Denoeud F, Henriet S, Mungpakdee S, Aury J, Da Silva C, Brinkmann H, Mikhaleva J, Olsen L, Jubin C, Canestro C, Bouquet J, Danks G, Poulain J, Campsteijn C, Adamski M, Cross I, Yadetie F, Muffato M, Louis A, Butcher S, Tsagkogeorga G, Konrad A, Singh S, Jensen M, Huynh Cong E, Eikeseth-Otteraa H, Noel B, Anthouard V, Porcel B, Kachouri-Lafond R, Nishino A, Ugolini M, Chourrout P, Nishida H, Aasland R, Huzurbazar S, Westhof E, Delsuc F, Lehrach H, Reinhardt R, Weissenbach J, Roy S, Artiguenave F, Postlethwait J, Manak J, Thompson E, Jaillon O, Du Pasquier L, Boudinot P, Liberles D, Volff J, Philippe H, Lenhard B, Roest Crollius H, Wincker P, Chourrout D,; Journal : Science; 2010
Tame affairs: domesticated transposase and domestic pigs: Author(s) : Volff J,; Journal : EMBO Rep; 2010
Molecular analysis of the sex chromosomes of the platyfish Xiphophorus maculatus: Towards the identification of a new type of master sexual regulator in vertebrates: Author(s) : Bohne A, Schultheis C, Galiana-Arnoux D, Froschauer A, Zhou Q, Schmidt C, Selz Y, Ozouf-Costaz C, Dettai A, Segurens B, Couloux A, Bernard-Samain S, Barbe V, Chilmonczyk S, Brunet F, Darras A, Tomaszkiewicz M, Semon M, Schartl M, Volff J,; Journal : Integr Zool; 2009
Identification of genes differentially expressed in dorsal and ventral chick midbrain during early Development: Author(s) : Chittka A, Volff J, Wizenmann A,; Journal : Bmc Developmental Biology; 2009
Sex Determination Diversity and Sex Chromosome Evolution in Poeciliid Fish: Author(s) : Schultheis C, Bohne A, Schartl M, Volff J, Galiana-Arnoux D,; Journal : Sexual Development; 2009
Cellular genes derived from Gypsy/Ty3 retrotransposons in mammalian genomes: Author(s) : Volff J,; Journal : Ann N Y Acad Sci; 2009
Transposable elements as drivers of genomic and biological diversity in vertebrates: Author(s) : Bohne A, Brunet F, Galiana-Arnoux D, Schultheis C, Volff J,; Journal : Chromosome Res; 2008
The evolution of teleost pigmentation and the fish-specific genome duplication: Author(s) : Braasch I, Volff J, Schartl M,; Journal : Journal of Fish Biology; 2008
Synaptonemal complex protein SYCP3 of the rat: Evolutionarily conserved domains and the assembly of higher order structures: Author(s) : Baier A, Alsheimer M, Volff J, Benavente R,; Journal : Sexual Development; 2007
Evolution of pigment synthesis pathways by gene and genome duplication in fish: Author(s) : Braasch I, Schartl M, Volff J,; Journal : BMC Evol Biol; 2007
Rab23 GTPase is expressed asymmetrically in Hensen's node and plays a role in the dorsoventral patterning of the chick neural tube: Author(s) : Li N, Volff J, Wizenmann A,; Journal : Dev Dyn; 2007
Evolution of melanocortin receptors in teleost fish: the melanocortin type 1 receptor: Author(s) : Selz Y, Braasch I, Hoffmann C, Schmidt C, Schultheis C, Schartl M, Volff J,; Journal : Gene; 2007
Modern genomes with retro-look: retrotransposed elements, retroposition and the origin of new genes: Author(s) : Volff J, Brosius J,; Journal : Genome Dyn; 2007
Governing sex determination in fish: Regulatory putsches and ephemeral dictators: Author(s) : Volff J, Nanda I, Schmid M, Schartl M,; Journal : Sexual Development; 2007
Fish genomes, comparative genomics and vertebrate evolution: Author(s) : Froschauer A, Braasch I, Volff J,; Journal : Current Genomics; 2006
Identification and comparative expression analysis of a second wt1 gene in zebrafish: Author(s) : Bollig F, Mehringer R, Perner B, Hartung C, Schafer M, Schartl M, Volff J, Winkler C, Englert C,; Journal : Dev Dyn; 2006
Dynamic expression of sparc precedes formation of skeletal elements in the Medaka (Oryzias latipes): Author(s) : Renn J, Schaedel M, Volff J, Goerlich R, Schartl M, Winkler C,; Journal : Gene; 2006
Molecular analysis of the sex-determining region of the platyfish Xiphophorus maculatus: Author(s) : Schultheis C, Zhou Q, Froschauer A, Nanda I, Selz Y, Schmidt C, Matschl S, Wenning M, Veith A, Naciri M, Hanel R, Braasch I, Dettai A, Bohne A, Ozouf-Costaz C, Chilmonczyk S, Segurens B, Couloux A, Bernard-Samain S, Schmid M, Schartl M, Volff J,; Journal : Zebrafish; 2006
Male-biased expression of X-chromosomal DM domain-less Dmrt8 genes in the mouse: Author(s) : Veith A, Klattig J, Dettai A, Schmidt C, Englert C, Volff J,; Journal : Genomics; 2006
Tissue-specific expression of dmrt genes in embryos and adults of the platyfish Xiphophorus maculatus: Author(s) : Veith A, Schafer M, Kluver N, Schmidt C, Schultheis C, Schartl M, Winkler C, Volff J,; Journal : Zebrafish; 2006
Turning junk into gold: domestication of transposable elements and the creation of new genes in eukaryotes: Author(s) : Volff J,; Journal : Bioessays; 2006
Helitron Transposons on the Sex Chromosomes of the Platyfish Xiphophorus maculatus and Their Evolution in Animal Genomes: Author(s) : Zhou Q, Froschauer A, Schultheis C, Schmidt C, Bienert G, Wenning M, Dettai A, Volff J,; Journal : Zebrafish; 2006
Transposable elements as a source of genetic innovation: expression and evolution of a family of retrotransposon-derived neogenes in mammals: Author(s) : Brandt J, Schrauth S, Veith A, Froschauer A, Haneke T, Schultheis C, Gessler M, Leimeister C, Volff J,; Journal : Gene; 2005
A family of neofunctionalized Ty3/gypsy retrotransposon genes in mammalian genomes: Author(s) : Brandt J, Veith A, Volff J,; Journal : Cytogenet Genome Res; 2005
Diversity and clustered distribution of retrotransposable elements in the compact genome of the pufferfish Tetraodon nigroviridis: Author(s) : Fischer C, Bouneau L, Coutanceau J, Weissenbach J, Ozouf-Costaz C, Volff J,; Journal : Cytogenet Genome Res; 2005
Hedgehog and retinoid signalling confines nkx2.2b expression to the lateral floor plate of the zebrafish trunk: Author(s) : Schafer M, Kinzel D, Neuner C, Schartl M, Volff J, Winkler C,; Journal : Mech Dev; 2005
Genome evolution and biodiversity in teleost fish: Author(s) : Volff J,; Journal : Heredity (Edinb); 2005
her7 and hey1, but not lunatic fringe show dynamic expression during somitogenesis in medaka (Oryzias latipes): Author(s) : Elmasri H, Liedtke D, Lucking G, Volff J, Gessler M, Winkler C,; Journal : Gene Expr Patterns; 2004
Global heterochromatic colocalization of transposable elements with minisatellites in the compact genome of the pufferfish Tetraodon nigroviridis: Author(s) : Fischer C, Bouneau L, Coutanceau J, Weissenbach J, Volff J, Ozouf-Costaz C,; Journal : Gene; 2004
Identification of a second egfr gene in Xiphophorus uncovers an expansion of the epidermal growth factor receptor family in fish: Author(s) : Gomez A, Volff J, Hornung U, Schartl M, Wellbrock C,; Journal : Mol Biol Evol; 2004
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype: Author(s) : Jaillon O, Aury J, Brunet F, Petit J, Stange-Thomann N, Mauceli E, Bouneau L, Fischer C, Ozouf-Costaz C, Bernot A, Nicaud S, Jaffe D, Fisher S, Lutfalla G, Dossat C, Segurens B, Dasilva C, Salanoubat M, Levy M, Boudet N, Castellano S, Anthouard V, Jubin C, Castelli V, Katinka M, Vacherie B, Biemont C, Skalli Z, Cattolico L, Poulain J, De Berardinis V, Cruaud C, Duprat S, Brottier P, Coutanceau J, Gouzy J, Parra G, Lardier G, Chapple C, McKernan K, McEwan P, Bosak S, Kellis M, Volff J, Guigo R, Zody M, Mesirov J, Lindblad-Toh K, Birren B, Nusbaum C, Kahn D, Robinson-Rechavi M, Laudet V, Schachter V, Quetier F, Saurin W, Scarpelli C, Wincker P, Lander E, Weissenbach J, Roest Crollius H,; Journal : Nature; 2004
The genetic map of Xiphophorus fishes represented by 24 multipoint linkage groups: Author(s) : Kazianis S, Nairn R, Walter R, Johnston D, Kumar J, Trono D, Della-Coletta L, Gimenez-Conti I, Rains J, Williams E, Pino B, Mamerow M, Kochan K, Schartl M, Vielkind J, Volff J, Woolcock B, Morizot D,; Journal : Zebrafish; 2004
Genetic, biochemical and evolutionary facets of Xmrk-induced melanoma formation in the fish Xiphophorus: Author(s) : Meierjohann S, Schartl M, Volff J,; Journal : Comp Biochem Physiol C Toxicol Pharmacol; 2004
Retroelement dynamics and a novel type of chordate retrovirus-like element in the miniature genome of the tunicate Oikopleura dioica: Author(s) : Volff J, Lehrach H, Reinhardt R, Chourrout D,; Journal : Mol Biol Evol; 2004
An active non-LTR retrotransposon with tandem structure in the compact genome of the pufferfish Tetraodon nigroviridis: Author(s) : Bouneau L, Fischer C, Ozouf-Costaz C, Froschauer A, Jaillon O, Coutanceau J, Korting C, Weissenbach J, Bernot A, Volff J,; Journal : Genome Res; 2003
Cloning of the dmrt1 gene of Xiphophorus maculatus: dmY/dmrt1Y is not the master sex-determining gene in the platyfish: Author(s) : Veith A, Froschauer A, Korting C, Nanda I, Hanel R, Schmid M, Schartl M, Volff J,; Journal : Gene; 2003
Diversity of retrotransposable elements in compact pufferfish genomes: Author(s) : Volff J, Bouneau L, Ozouf-Costaz C, Fischer C,; Journal : Trends Genet; 2003
Medaka dmY/dmrt1Y is not the universal primary sex-determining gene in fish: Author(s) : Volff J, Kondo M, Schartl M,; Journal : Trends Genet; 2003
The Xmrk oncogene can escape nonfunctionalization in a highly unstable subtelomeric region of the genome of the fish Xiphophorus: Author(s) : Volff J, Korting C, Froschauer A, Zhou Q, Wilde B, Schultheis C, Selz Y, Sweeney K, Duschl J, Wichert K, Altschmied J, Schartl M,; Journal : Genomics; 2003
Evolution of signal transduction by gene and genome duplication in fish: Author(s) : Volff J, Schartl M,; Journal : J Struct Funct Genomics; 2003
Evolutionary dynamics of the DM domain gene family in metazoans: Author(s) : Volff J, Zarkower D, Bardwell V, Schartl M,; Journal : J Mol Evol; 2003
The teleost fish medaka (Oryzias latipes) as genetic model to study gravity dependent bone homeostasis in vivo: Author(s) : Wagner T, Renn J, Riemensperger T, Volff J, Koster R, Goerlich R, Schartl M, Winkler C,; Journal : Adv Space Res; 2003
Characterization of hey bHLH genes in teleost fish: Author(s) : Winkler C, Elmasri H, Klamt B, Volff J, Gessler M,; Journal : Dev Genes Evol; 2003
Functional divergence of two zebrafish midkine growth factors following fish-specific gene duplication: Author(s) : Winkler C, Schafer M, Duschl J, Schartl M, Volff J,; Journal : Genome Res; 2003
Subfunctionalization of duplicate mitf genes associated with differential degeneration of alternative exons in fish: Author(s) : Altschmied J, Delfgaauw J, Wilde B, Duschl J, Bouneau L, Volff J, Schartl M,; Journal : Genetics; 2002
Construction and initial analysis of bacterial artificial chromosome (BAC) contigs from the sex-determining region of the platyfish Xiphophorus maculatus: Author(s) : Froschauer A, Korting C, Katagiri T, Aoki T, Asakawa S, Shimizu N, Schartl M, Volff J,; Journal : Gene; 2002
Molecular cloning and characterization of DMRT genes from the medaka Oryzias latipes and the platyfish Xiphophorus maculatus: Author(s) : Kondo M, Froschauer A, Kitano A, Nanda I, Hornung U, Volff J, Asakawa S, Mitani H, Naruse K, Tanaka M, Schmid M, Shimizu N, Schartl M, Shima A,; Journal : Gene; 2002
Sex determination and sex chromosome evolution in the medaka, Oryzias latipes, and the platyfish, Xiphophorus maculatus: Author(s) : Volff J, Schartl M,; Journal : Cytogenet Genome Res; 2002
Genomic plasticity and melanoma formation in the fish Xiphophorus: Author(s) : Froschauer A, Korting C, Bernhardt W, Nanda I, Schmid M, Schartl M, Volff J,; Journal : Mar Biotechnol (NY); 2001
Transformation-associated recombination (TAR) cloning of tumor-inducing Xmrk2 gene from Xiphophorus maculatus: Author(s) : Kirchner J, Ivanova V, Samson A, Noskov V, Volff J, Resnick M, Walter R,; Journal : Mar Biotechnol (NY); 2001
Ty3/Gypsy retrotransposon fossils in mammalian genomes: did they evolve into new cellular functions?: Author(s) : Volff J, Korting C, Schartl M,; Journal : Mol Biol Evol; 2001
Fish retroposons related to the Penelope element of Drosophila virilis define a new group of retrotransposable elements: Author(s) : Volff J, Hornung U, Schartl M,; Journal : Mol Genet Genomics; 2001
Jule from the fish Xiphophorus is the first complete vertebrate Ty3/Gypsy retrotransposon from the Mag family: Author(s) : Volff J, Korting C, Altschmied J, Duschl J, Sweeney K, Wichert K, Froschauer A, Schartl M,; Journal : Mol Biol Evol; 2001
Non-LTR retrotransposons encoding a restriction enzyme-like endonuclease in vertebrates: Author(s) : Volff J, Korting C, Froschauer A, Sweeney K, Schartl M,; Journal : J Mol Evol; 2001
Evolution and discontinuous distribution of Rex3 retrotransposons in fish: Author(s) : Volff J, Korting C, Meyer A, Schartl M,; Journal : Mol Biol Evol; 2001
Variability of genetic sex determination in poeciliid fishes: Author(s) : Volff J, Schartl M,; Journal : Genetica; 2001
Primary structure and expression of the xiphophorus DNA-(cytosine-5)-methyltransferase XDNMT-1: Author(s) : Altschmied J, Volff J, Winkler C, Gutbrod H, Korting C, Pagany M, Schartl M,; Journal : Gene; 2000
Amplification of a long terminal repeat-like element on the Y chromosome of the platyfish, Xiphophorus maculatus: Author(s) : Nanda I, Volff J, Weis S, Korting C, Froschauer A, Schmid M, Schartl M,; Journal : Chromosoma; 2000
A new beginning with new ends: linearisation of circular chromosomes during bacterial evolution: Author(s) : Volff J, Altenbuchner J,; Journal : FEMS Microbiol Lett; 2000
The 1-kb-repeat-encoded DNA-binding protein as repressor of an alpha-glucosidase operon flanking the amplifiable sequence AUD1 of Streptomyces lividans: Author(s) : Volff J, Altenbuchner J,; Journal : Microbiology; 2000
Multiple lineages of the non-LTR retrotransposon Rex1 with varying success in invading fish genomes: Author(s) : Volff J, Korting C, Schartl M,; Journal : Mol Biol Evol; 2000
Cloning and sequence of partial cDNAs encoding the human type V and VI adenylyl cyclases and subsequent RNA-quantification in various tissues: Author(s) : Raimundo S, Giray J, Volff J, Schwab M, Altenbuchner J, Ratge D, Wisser H,; Journal : Clin Chim Acta; 1999
Melanoma loss-of-function mutants in Xiphophorus caused by Xmrk-oncogene deletion and gene disruption by a transposable element: Author(s) : Schartl M, Hornung U, Gutbrod H, Volff J, Wittbrodt J,; Journal : Genetics; 1999
Atrial fibrillation after coronary artery bypass surgery: association with changes in G protein levels in mononuclear leukocytes: Author(s) : Tittelbach V, Schwab M, Volff J, Morike K, Lemke P, Giray J, Lee P, Ratge D, Hellberg K, Wisser H,; Journal : Naunyn Schmiedebergs Arch Pharmacol; 1999
The non-LTR retrotransposon Rex3 from the fish Xiphophorus is widespread among teleosts: Author(s) : Volff J, Korting C, Sweeney K, Schartl M,; Journal : Mol Biol Evol; 1999
Replication of the linear chromosomal DNA from the centrally located oriC of Streptomyces ambofaciens revealed by PFGE gene dosage analysis: Author(s) : Fischer G, Holl A, Volff J, Vandewiele D, Decaris B, Leblond P,; Journal : Res Microbiol; 1998
Agonist-induced down-regulation of the beta2-adrenoceptor and its mRNA in human mononuclear leukocytes: Author(s) : Tittelbach V, Volff J, Giray J, Ratge D, Wisser H,; Journal : Biochem Pharmacol; 1998
Genetic instability of the Streptomyces chromosome: Author(s) : Volff J, Altenbuchner J,; Journal : Mol Microbiol; 1998
High-frequency transposition of IS1373, the insertion sequence delimiting the amplifiable element AUD2 of Streptomyces lividans: Author(s) : Volff J, Altenbuchner J,; Journal : J Bacteriol; 1997
High frequency transposition of the Tn5 derivative Tn5493 in Streptomyces lividans: Author(s) : Volff J, Altenbuchner J,; Journal : Gene; 1997
Influence of disruption of the recA gene on genetic instability and genome rearrangement in Streptomyces lividans: Author(s) : Volff J, Altenbuchner J,; Journal : J Bacteriol; 1997
Nucleotide sequence analysis of the junctions of the terminal inverted repeats of the Streptomyces lividans linear chromosome: Author(s) : Volff J, Viell P, Altenbuchner J,; Journal : Mol Gen Genet; 1997
Artificial circularization of the chromosome with concomitant deletion of its terminal inverted repeats enhances genetic instability and genome rearrangement in Streptomyces lividans: Author(s) : Volff J, Viell P, Altenbuchner J,; Journal : Mol Gen Genet; 1997
Nucleotide sequence and role in DNA amplification of the direct repeats composing the amplifiable element AUD1 of Streptomyces lividans 66: Author(s) : Volff J, Eichenseer C, Viell P, Piendl W, Altenbuchner J,; Journal : Mol Microbiol; 1996
Stimulation of genetic instability and associated large genomic rearrangements in Streptomyces ambofaciens by three fluoroquinolones: Author(s) : Volff J, Vandewiele D, Decaris B,; Journal : Antimicrob Agents Chemother; 1994
Stimulation of genetic instability in Streptomyces ambofaciens ATCC 23877 by antibiotics that interact with DNA gyrase: Author(s) : Volff J, Vandewiele D, Simonet J, Decaris B,; Journal : J Gen Microbiol; 1993
Ultraviolet light, mitomycin C and nitrous acid induce genetic instability in Streptomyces ambofaciens ATCC23877: Author(s) : Volff J, Vandewiele D, Simonet J, Decaris B,; Journal : Mutat Res; 1993
Genetic instability in Streptomyces ambofaciens: inducibility and associated genome plasticity: Author(s) : Simonet J, Schneider D, Volff J, Dary A, Decaris B,; Journal : Gene; 1992

Sections

Publications

Coupling between Sequence-Mediated Nucleosome Organization and Genome Evolution

Clustering of Sex-Biased Genes and Transposable Elements in the Genome of the Medaka Fish Oryzias latipes

Differential expression of transposable elements in the medaka melanoma model

Giant Lungfish genome elucidates the conquest of land by vertebrates

Transposable element-derived sequences in vertebrate development

ANISEED 2019: 4D exploration of genetic data for an extended range of tunicates

Sequencing the Genome of Indian Flying Fox, Natural Reservoir of Nipah Virus, Using Hybrid Assembly and Conservative Secondary Scaffolding

Contrasting gene decay in subterranean vertebrates: insights from cavefishes and fossorial mammals

Sex and the TEs: transposable elements in sexual development and function in animals

Massive Changes of Genome Size Driven by Expansions of Non-autonomous Transposable Elements

Developmental and comparative transcriptomic identification of iridophore contribution to white barring in clownfish

Evidence for DNA Sequence Encoding of an Accessible Nucleosomal Array across Vertebrates

Teleost Fish-Specific Preferential Retention of Pigmentation Gene-Containing Families After Whole Genome Duplications in Vertebrates

LTR-retrotransposon transcriptome modulation in response to endotoxin-induced stress in PBMCs

Analysis of the spotted gar genome suggests absence of causative link between ancestral genome duplication and transposable element diversification in teleost fish

piRNAs and their diverse roles: a transposable element-driven tactic for gene regulation?

Expansion by whole genome duplication and evolution of the sox gene family in teleost fish

The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons

Whole Genome Duplications Shaped the Receptor Tyrosine Kinase Repertoire of Jawed Vertebrates

Evolutionary history of the mammalian synaptonemal complex

Endogenous Retroviruses in Fish Genomes: From Relics of Past Infections to Evolutionary Innovations?

Not so bad after all: retroviruses and long terminal repeat retrotransposons as a source of new genes in vertebrates

piRNAs and their diverse roles: a transposable element-driven tactic for gene regulation?

X. couchianus and X. hellerii genome models provide genomic variation insight among Xiphophorus species

Comparative analysis of transposable elements highlights mobilome diversity and evolution in vertebrates

Transposable elements and early evolution of sex chromosomes in fish

Embryonic expression of endogenous retroviral RNAs in somatic tissues adjacent to the Oikopleura germline

The coelacanth: Can a "living fossil" have active transposable elements in its genome?

Expression of young HERV-H loci in the course of colorectal carcinoma and correlation with molecular subtypes

Transcriptional control analyses of the Xiphophorus melanoma oncogene

Insights into Sex Chromosome Evolution and Aging from the Genome of a Short-Lived Fish

Evolutionary impact of transposable elements on genomic diversity and lineage-specific innovation in vertebrates

The cavefish genome reveals candidate genes for eye loss

Interspecies insertion polymorphism analysis reveals recent activity of transposable elements in extant coelacanths

High temperature increases the masculinization rate of the all-female (XX) rainbow trout "Mal" population

TOPAZ1, a novel germ cell-specific expressed gene conserved during evolution across vertebrates

The vertebrate makorin ubiquitin ligase gene family has been shaped by large-scale duplication and retroposition from an ancestral gonad-specific, maternal-effect gene

Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate

Tame affairs: domesticated transposase and domestic pigs

Molecular analysis of the sex chromosomes of the platyfish Xiphophorus maculatus: Towards the identification of a new type of master sexual regulator in vertebrates

Identification of genes differentially expressed in dorsal and ventral chick midbrain during early Development

Sex Determination Diversity and Sex Chromosome Evolution in Poeciliid Fish

Cellular genes derived from Gypsy/Ty3 retrotransposons in mammalian genomes

Transposable elements as drivers of genomic and biological diversity in vertebrates

The evolution of teleost pigmentation and the fish-specific genome duplication

Synaptonemal complex protein SYCP3 of the rat: Evolutionarily conserved domains and the assembly of higher order structures

Evolution of pigment synthesis pathways by gene and genome duplication in fish

Rab23 GTPase is expressed asymmetrically in Hensen's node and plays a role in the dorsoventral patterning of the chick neural tube

Evolution of melanocortin receptors in teleost fish: the melanocortin type 1 receptor

Modern genomes with retro-look: retrotransposed elements, retroposition and the origin of new genes

Governing sex determination in fish: Regulatory putsches and ephemeral dictators

Fish genomes, comparative genomics and vertebrate evolution

Identification and comparative expression analysis of a second wt1 gene in zebrafish

Dynamic expression of sparc precedes formation of skeletal elements in the Medaka (Oryzias latipes)

Molecular analysis of the sex-determining region of the platyfish Xiphophorus maculatus

Male-biased expression of X-chromosomal DM domain-less Dmrt8 genes in the mouse

Tissue-specific expression of dmrt genes in embryos and adults of the platyfish Xiphophorus maculatus

Turning junk into gold: domestication of transposable elements and the creation of new genes in eukaryotes

Helitron Transposons on the Sex Chromosomes of the Platyfish Xiphophorus maculatus and Their Evolution in Animal Genomes

Transposable elements as a source of genetic innovation: expression and evolution of a family of retrotransposon-derived neogenes in mammals

A family of neofunctionalized Ty3/gypsy retrotransposon genes in mammalian genomes

Diversity and clustered distribution of retrotransposable elements in the compact genome of the pufferfish Tetraodon nigroviridis

Hedgehog and retinoid signalling confines nkx2.2b expression to the lateral floor plate of the zebrafish trunk

Genome evolution and biodiversity in teleost fish

her7 and hey1, but not lunatic fringe show dynamic expression during somitogenesis in medaka (Oryzias latipes)

Global heterochromatic colocalization of transposable elements with minisatellites in the compact genome of the pufferfish Tetraodon nigroviridis

Identification of a second egfr gene in Xiphophorus uncovers an expansion of the epidermal growth factor receptor family in fish

Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

The genetic map of Xiphophorus fishes represented by 24 multipoint linkage groups

Genetic, biochemical and evolutionary facets of Xmrk-induced melanoma formation in the fish Xiphophorus

Retroelement dynamics and a novel type of chordate retrovirus-like element in the miniature genome of the tunicate Oikopleura dioica

An active non-LTR retrotransposon with tandem structure in the compact genome of the pufferfish Tetraodon nigroviridis

Cloning of the dmrt1 gene of Xiphophorus maculatus: dmY/dmrt1Y is not the master sex-determining gene in the platyfish

Diversity of retrotransposable elements in compact pufferfish genomes

Medaka dmY/dmrt1Y is not the universal primary sex-determining gene in fish

The Xmrk oncogene can escape nonfunctionalization in a highly unstable subtelomeric region of the genome of the fish Xiphophorus

Evolution of signal transduction by gene and genome duplication in fish

Evolutionary dynamics of the DM domain gene family in metazoans