Publications

Giant Lungfish genome elucidates the conquest of land by vertebrates: Author(s) : Meyer A, Schloissnig S, Franchini P, Du K, Woltering J, Irisarri I, Wong W, Nowoshilow S, Kneitz S, Kawaguchi A, Fabrizius A, Xiong P, Dechaud C, Spaink H, Volff J, Simakov O, Burmester T, Tanaka E, Schartl M,; Journal : Nature; 2021
Transposable element-derived sequences in vertebrate development: Author(s) : Etchegaray E, Naville M, Volff J, Haftek-Terreau Z,; Journal : Mob DNA; 2021
Coupling between Sequence-Mediated Nucleosome Organization and Genome Evolution: Author(s) : Barbier J, Vaillant C, Volff J, Brunet F, Audit B,; Journal : Genes (Basel); 2021
Clustering of Sex-Biased Genes and Transposable Elements in the Genome of the Medaka Fish Oryzias latipes: Author(s) : Dechaud C, Miyake S, Martinez-Bengochea A, Schartl M, Volff J, Naville M,; Journal : Genome Biol Evol; 2021
Differential expression of transposable elements in the medaka melanoma model: Author(s) : Helmprobst F, Kneitz S, Klotz B, Naville M, Dechaud C, Volff J, Schartl M,; Journal : PLoS One; 2021
ANISEED 2019: 4D exploration of genetic data for an extended range of tunicates: Author(s) : Dardaillon J, Dauga D, Simion P, Faure E, Onuma T, DeBiasse M, Louis A, Nitta K, Naville M, Besnardeau L, Reeves W, Wang K, Fagotto M, Guéroult-Bellone M, Fujiwara S, Dumollard R, Veeman M, Volff J, Roest Crollius H, Douzery E, Ryan J, Davidson B, Nishida H, Dantec C, Lemaire P,; Journal : Nucleic Acids Res; 2020
Sequencing the Genome of Indian Flying Fox, Natural Reservoir of Nipah Virus, Using Hybrid Assembly and Conservative Secondary Scaffolding: Author(s) : Fouret J, Brunet F, Binet M, Aurine N, Enchéry F, Croze S, Guinier M, Goumaidi A, Preininger D, Volff J, Bailly-Bechet M, Lachuer J, Horvat B, Legras-Lachuer C,; Journal : Front Microbiol; 2020
Contrasting gene decay in subterranean vertebrates: insights from cavefishes and fossorial mammals: Author(s) : Policarpo M, Fumey J, Lafargeas P, Naquin D, Thermes C, Naville M, Dechaud C, Volff J, Cabau C, Klopp C, Møller P, Bernatchez L, García-Machado E, Rétaux S, Casane D,; Journal : Mol Biol Evol; 2020
Sex and the TEs: transposable elements in sexual development and function in animals: Author(s) : Dechaud C, Volff J, Schartl M, Naville M,; Journal : Mobile DNA; 2019
Developmental and comparative transcriptomic identification of iridophore contribution to white barring in clownfish: Author(s) : Salis P, Lorin T, Lewis V, Rey C, Marcionetti A, Escande M, Roux N, Besseau L, Salamin N, Semon M, Parichy D, Volff J, Laudet V,; Journal : Pigment Cell Melanoma Res; 2019
Massive Changes of Genome Size Driven by Expansions of Non-autonomous Transposable Elements: Author(s) : Naville M, Henriet S, Warren I, Sumic S, Reeve M, Volff J, Chourrout D,; Journal : Current Biology; 2019
Evidence for DNA Sequence Encoding of an Accessible Nucleosomal Array across Vertebrates: Author(s) : Brunet F, Audit B, Drillon G, Argoul F, Volff J, Arneodo A,; Journal : Biophys J; 2018
Teleost Fish-Specific Preferential Retention of Pigmentation Gene-Containing Families After Whole Genome Duplications in Vertebrates: Author(s) : Lorin T, Brunet F, Laudet V, Volff J,; Journal : G3 (Bethesda); 2018
LTR-retrotransposon transcriptome modulation in response to endotoxin-induced stress in PBMCs: Author(s) : Mommert M, Tabone O, Oriol G, Cerrato E, Guichard A, Naville M, Fournier P, Volff J, Pachot A, Monneret G, Venet F, Brengel-Pesce K, Textoris J, Mallet F,; Journal : BMC Genomics; 2018
Analysis of the spotted gar genome suggests absence of causative link between ancestral genome duplication and transposable element diversification in teleost fish: Author(s) : Chalopin D, Volff J,; Journal : J Exp Zool B Mol Dev Evol; 2017
piRNAs and their diverse roles: a transposable element-driven tactic for gene regulation?: Author(s) : Sarkar A, Volff J, Vaury C,; Journal : FASEB J; 2017
Expansion by whole genome duplication and evolution of the sox gene family in teleost fish: Author(s) : Voldoire E, Brunet F, Naville M, Volff J, Galiana D,; Journal : PLoS One; 2017
The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons: Author(s) : Braasch I, Gehrke A, Smith J, Kawasaki K, Manousaki T, Pasquier J, Amores A, Desvignes T, Batzel P, Catchen J, Berlin A, Campbell M, Barrell D, Martin K, Mulley J, Ravi V, Lee A, Nakamura T, Chalopin D, Fan S, Wcisel D, Canestro C, Sydes J, Beaudry F, Sun Y, Hertel J, Beam M, Fasold M, Ishiyama M, Johnson J, Kehr S, Lara M, Letaw J, Litman G, Litman R, Mikami M, Ota T, Saha N, Williams L, Stadler P, Wang H, Taylor J, Fontenot Q, Ferrara A, Searle S, Aken B, Yandell M, Schneider I, Yoder J, Volff J, Meyer A, Amemiya C, Venkatesh B, Holland P, Guiguen Y, Bobe J, Shubin N, Di Palma F, Alfoldi J, Lindblad-Toh K, Postlethwait J,; Journal : Nat Genet; 2016
Whole Genome Duplications Shaped the Receptor Tyrosine Kinase Repertoire of Jawed Vertebrates: Author(s) : Brunet F, Volff J, Schartl M,; Journal : Genome Biol Evol; 2016
Evolutionary history of the mammalian synaptonemal complex: Author(s) : Fraune J, Brochier-Armanet C, Alsheimer M, Volff J, Schucker K, Benavente R,; Journal : Chromosoma; 2016
Endogenous Retroviruses in Fish Genomes: From Relics of Past Infections to Evolutionary Innovations?: Author(s) : Naville M, Volff J,; Journal : Front Microbiol; 2016
Not so bad after all: retroviruses and long terminal repeat retrotransposons as a source of new genes in vertebrates: Author(s) : Naville M, Warren I, Haftek-Terreau Z, Chalopin D, Brunet F, Levin P, Galiana D, Volff J,; Journal : Clin Microbiol Infect; 2016
piRNAs and their diverse roles: a transposable element-driven tactic for gene regulation?: Author(s) : Sarkar A, Volff J, Vaury C,; Journal : FASEB J; 2016
X. couchianus and X. hellerii genome models provide genomic variation insight among Xiphophorus species: Author(s) : Shen Y, Chalopin D, Garcia T, Boswell M, Boswell W, Shiryev S, Agarwala R, Volff J, Postlethwait J, Schartl M, Minx P, Warren W, Walter R,; Journal : BMC Genomics; 2016
Comparative analysis of transposable elements highlights mobilome diversity and evolution in vertebrates: Author(s) : Chalopin D, Naville M, Plard F, Galiana D, Volff J,; Journal : Genome Biol Evol; 2015
Transposable elements and early evolution of sex chromosomes in fish: Author(s) : Chalopin D, Volff J, Galiana D, Anderson J, Schartl M,; Journal : Chromosome Res; 2015
Embryonic expression of endogenous retroviral RNAs in somatic tissues adjacent to the Oikopleura germline: Author(s) : Henriet S, Sumic S, Doufoundou-Guilengui C, Jensen M, Grandmougin C, Fal K, Thompson E, Volff J, Chourrout D,; Journal : Nucleic Acids Res; 2015
The coelacanth: Can a "living fossil" have active transposable elements in its genome?: Author(s) : Naville M, Chalopin D, Casane D, Laurenti P, Volff J,; Journal : Mob Genet Elements; 2015
Expression of young HERV-H loci in the course of colorectal carcinoma and correlation with molecular subtypes: Author(s) : Perot P, Mullins C, Naville M, Bressan C, Huhns M, Gock M, Kuhn F, Volff J, Trillet-Lenoir V, Linnebacher M, Mallet F,; Journal : Oncotarget; 2015
Transcriptional control analyses of the Xiphophorus melanoma oncogene: Author(s) : Regneri J, Volff J, Schartl M,; Journal : Comp Biochem Physiol C Toxicol Pharmacol; 2015
Insights into Sex Chromosome Evolution and Aging from the Genome of a Short-Lived Fish: Author(s) : Reichwald K, Petzold A, Koch P, Downie B, Hartmann N, Pietsch S, Baumgart M, Chalopin D, Felder M, Bens M, Sahm A, Szafranski K, Taudien S, Groth M, Arisi I, Weise A, Bhatt S, Sharma V, Kraus J, Schmid F, Priebe S, Liehr T, Gorlach M, Than M, Hiller M, Kestler H, Volff J, Schartl M, Cellerino A, Englert C, Platzer M,; Journal : Cell; 2015
Evolutionary impact of transposable elements on genomic diversity and lineage-specific innovation in vertebrates: Author(s) : Warren I, Naville M, Chalopin D, Levin P, Berger C, Galiana D, Volff J,; Journal : Chromosome Res; 2015
Interspecies insertion polymorphism analysis reveals recent activity of transposable elements in extant coelacanths: Author(s) : Naville M, Chalopin D, Volff J,; Journal : PLoS One; 2014
High temperature increases the masculinization rate of the all-female (XX) rainbow trout "Mal" population: Author(s) : Valdivia K, Jouanno E, Volff J, Galiana-Arnoux D, Guyomard R, Helary L, Mourot B, Fostier A, Quillet E, Guiguen Y,; Journal : PLoS One; 2014

Sections

Publications

Giant Lungfish genome elucidates the conquest of land by vertebrates

Transposable element-derived sequences in vertebrate development

Coupling between Sequence-Mediated Nucleosome Organization and Genome Evolution

Clustering of Sex-Biased Genes and Transposable Elements in the Genome of the Medaka Fish Oryzias latipes

Differential expression of transposable elements in the medaka melanoma model

ANISEED 2019: 4D exploration of genetic data for an extended range of tunicates

Sequencing the Genome of Indian Flying Fox, Natural Reservoir of Nipah Virus, Using Hybrid Assembly and Conservative Secondary Scaffolding

Contrasting gene decay in subterranean vertebrates: insights from cavefishes and fossorial mammals

Sex and the TEs: transposable elements in sexual development and function in animals

Developmental and comparative transcriptomic identification of iridophore contribution to white barring in clownfish

Massive Changes of Genome Size Driven by Expansions of Non-autonomous Transposable Elements

Evidence for DNA Sequence Encoding of an Accessible Nucleosomal Array across Vertebrates

Teleost Fish-Specific Preferential Retention of Pigmentation Gene-Containing Families After Whole Genome Duplications in Vertebrates

LTR-retrotransposon transcriptome modulation in response to endotoxin-induced stress in PBMCs

Analysis of the spotted gar genome suggests absence of causative link between ancestral genome duplication and transposable element diversification in teleost fish

piRNAs and their diverse roles: a transposable element-driven tactic for gene regulation?

Expansion by whole genome duplication and evolution of the sox gene family in teleost fish

The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons

Whole Genome Duplications Shaped the Receptor Tyrosine Kinase Repertoire of Jawed Vertebrates

Evolutionary history of the mammalian synaptonemal complex

Endogenous Retroviruses in Fish Genomes: From Relics of Past Infections to Evolutionary Innovations?

Not so bad after all: retroviruses and long terminal repeat retrotransposons as a source of new genes in vertebrates

piRNAs and their diverse roles: a transposable element-driven tactic for gene regulation?

X. couchianus and X. hellerii genome models provide genomic variation insight among Xiphophorus species

Comparative analysis of transposable elements highlights mobilome diversity and evolution in vertebrates

Transposable elements and early evolution of sex chromosomes in fish

Embryonic expression of endogenous retroviral RNAs in somatic tissues adjacent to the Oikopleura germline

The coelacanth: Can a "living fossil" have active transposable elements in its genome?

Expression of young HERV-H loci in the course of colorectal carcinoma and correlation with molecular subtypes

Transcriptional control analyses of the Xiphophorus melanoma oncogene

Insights into Sex Chromosome Evolution and Aging from the Genome of a Short-Lived Fish

Evolutionary impact of transposable elements on genomic diversity and lineage-specific innovation in vertebrates

Interspecies insertion polymorphism analysis reveals recent activity of transposable elements in extant coelacanths

High temperature increases the masculinization rate of the all-female (XX) rainbow trout "Mal" population

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