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  • Seyres, D., Y. Ghavi-Helm, G. Junion, O. Taghli-Lamallem, C. Guichard, L. Roder, C. Girardot, E. E. Furlong, and L. Perrin. 2016. Identification and in silico modeling of enhancers reveals new features of the cardiac differentiation network. Development 143:4533-4542.
  • Ghavi-Helm, Y., B. Zhao, and E. E. Furlong. 2016. Chromatin Immunoprecipitation for Analyzing Transcription Factor Binding and Histone Modifications in Drosophila. Methods Mol Biol 1478:263-277.
  • Ghavi-Helm, Y., F. A. Klein, T. Pakozdi, L. Ciglar, D. Noordermeer, W. Huber, and E. E. Furlong. 2016. Corrigendum: Enhancer loops appear stable during development and are associated with paused polymerase. Nature 537:254.







  • Ghavi-Helm, Y., and E. E. Furlong. 2012. Analyzing transcription factor occupancy during embryo development using ChIP-seq. Methods Mol Biol 786:229-245.
  • Carriere, L., S. Graziani, O. Alibert, Y. Ghavi-Helm, F. Boussouar, H. Humbertclaude, S. Jounier, J. C. Aude, C. Keime, J. Murvai, M. Foglio, M. Gut, I. Gut, M. Lathrop, J. Soutourina, M. Gerard, and M. Werner. 2012. Genomic binding of Pol III transcription machinery and relationship with TFIIS transcription factor distribution in mouse embryonic stem cells. Nucleic Acids Res 40:270-283.
  • Bonn, S., R. P. Zinzen, C. Girardot, E. H. Gustafson, A. Perez-Gonzalez, N. Delhomme, Y. Ghavi-Helm, B. Wilczynski, A. Riddell, and E. E. Furlong. 2012. Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development. Nat Genet 44:148-156.



  • Kwapisz, M., M. Wery, D. Despres, Y. Ghavi-Helm, J. Soutourina, P. Thuriaux, and F. Lacroute. 2008. Mutations of RNA polymerase II activate key genes of the nucleoside triphosphate biosynthetic pathways. EMBO J 27:2411-2421.
  • Ghavi-Helm, Y., M. Michaut, J. Acker, J. C. Aude, P. Thuriaux, M. Werner, and J. Soutourina. 2008. Genome-wide location analysis reveals a role of TFIIS in RNA polymerase III transcription. Genes Dev 22:1934-1947.
  • Esnault, C., Y. Ghavi-Helm, S. Brun, J. Soutourina, N. Van Berkum, C. Boschiero, F. Holstege, and M. Werner. 2008. Mediator-dependent recruitment of TFIIH modules in preinitiation complex. Mol Cell 31:337-346.
  • Cazalet, C., S. Jarraud, Y. Ghavi-Helm, F. Kunst, P. Glaser, J. Etienne, and C. Buchrieser. 2008. Multigenome analysis identifies a worldwide distributed epidemic Legionella pneumophila clone that emerged within a highly diverse species. Genome Res 18:431-441.