Publications

This folder holds the following references to publications, sorted by year and author.

There are 22 references in this bibliography folder.

Jacob, H, Besson, M, Oberhaensli, F, Taylor, A, Gillet, B, Hughes, S, Melvin, SD, Bustamante, P, Swarzenski, PW, Lecchini, D, and Metian, M (2021).
A multifaceted assessment of the effects of polyethylene microplastics on juvenile gilthead seabreams (Sparus aurata)
Aquat Toxicol, 241:106004.

Parisot, N, Vargas-Chávez, C, Goubert, C, Baa-Puyoulet, P, Balmand, S, Beranger, L, Blanc, C, Bonnamour, A, Boulesteix, M, Burlet, N, Calevro, F, Callaerts, P, Chancy, T, Charles, H, Colella, S, Da Silva Barbosa, A, Dell'Aglio, E, Di Genova, A, Febvay, G, Gabaldón, T, Galvão Ferrarini, M, Gerber, A, Gillet, B, Hubley, R, Hughes, S, Jacquin-Joly, E, Maire, J, Marcet-Houben, M, Masson, F, Meslin, C, Montagné, N, Moya, A, Ribeiro de Vasconcelos, AT, Richard, G, Rosen, J, Sagot, MF, Smit, AFA, Storer, JM, Vincent-Monegat, C, Vallier, A, Vigneron, A, Zaidman-Rémy, A, Zamoum, W, Vieira, C, Rebollo, R, Latorre, A, and Heddi, A (2021).
The transposable element-rich genome of the cereal pest Sitophilus oryzae
BMC Biol, 19(1):241.

Girardot, F, Allégra, S, Pfendler, S, Conord, C, Rey, C, Gillet, B, Hughes, S, Bouchardon, AE, Hua, A, Paran, F, Bouchardon, JL, and Faure, O (2020).
Bacterial diversity on an abandoned, industrial wasteland contaminated by polychlorinated biphenyls, dioxins, furans and trace metals
Sci Total Environ, 748:141242.

Maire, J, Parisot, N, Galvao Ferrarini, M, Vallier, A, Gillet, B, Hughes, S, Balmand, S, Vincent-Monégat, C, Zaidman-Rémy, A, and Heddi, A (2020).
Spatial and morphological reorganization of endosymbiosis during metamorphosis accommodates adult metabolic requirements in a weevil
Proc Natl Acad Sci U S A, 117(32):19347–19358.

Benaoudia, S, Martin, A, Puig Gamez, M, Gay, G, Lagrange, B, Cornut, M, Krasnykov, K, Claude, JB, Bourgeois, CF, Hughes, S, Gillet, B, Allatif, O, Corbin, A, Ricci, R, and Henry, T (2019).
A genome-wide screen identifies IRF2 as a key regulator of caspase-4 in human cells
EMBO Rep, 20(9):e48235.

Nauroy, P, Guiraud, A, Chlasta, J, Malbouyres, M, Gillet, B, Hughes, S, Lambert, E, and Ruggiero, F (2019).
Gene profile of zebrafish fin regeneration offers clues to kinetics, organization and biomechanics of basement membrane
Matrix Biol, 75-76:82–101.

Gillet, B, Cottet, M, Destanque, T, Kue, K, Descloux, S, Chanudet, V, and Hughes, S (2018).
Direct fishing and eDNA metabarcoding for biomonitoring during a 3-year survey significantly improves number of fish detected around a South East Asian reservoir
PLoS One, 13(12):e0208592.

Martino, ME, Joncour, P, Leenay, R, Gervais, H, Shah, M, Hughes, S, Gillet, B, Beisel, C, and Leulier, F (2018).
Bacterial Adaptation to the Host's Diet Is a Key Evolutionary Force Shaping Drosophila-Lactobacillus Symbiosis
Cell Host Microbe, 24(1):109–119.

Nauroy, P, Hughes, S, Naba, A, and Ruggiero, F (2018).
The in-silico zebrafish matrisome: A new tool to study extracellular matrix gene and protein functions
Matrix Biol, 65:5–13.

Holzer, G, Besson, M, Lambert, A, François, L, Barth, P, Gillet, B, Hughes, S, Piganeau, G, Leulier, F, Viriot, L, Lecchini, D, and Laudet, V (2017).
Fish larval recruitment to reefs is a thyroid hormone-mediated metamorphosis sensitive to the pesticide chlorpyrifos
Elife, 6.

Matos, RC, Schwarzer, M, Gervais, H, Courtin, P, Joncour, P, Gillet, B, Ma, D, Bulteau, AL, Martino, ME, Hughes, S, Chapot-Chartier, MP, and Leulier, F (2017).
D-Alanylation of teichoic acids contributes to Lactobacillus plantarum-mediated Drosophila growth during chronic undernutrition
Nat Microbiol.

Oger, PM, Callac, N, Oger-Desfeux, C, Hughes, S, Gillet, B, Jebbar, M, and Godfroy, A (2017).
Complete Genome Sequence of the Hyperthermophilic Piezophilic Archaeon Pyrococcus kukulkanii NCB100 Isolated from the Rebecca's Roost Hydrothermal Vent in the Guaymas Basin
Genome Announc, 5(7).

Tefit, MA, Gillet, B, Joncour, P, Hughes, S, and Leulier, F (2017).
Stable association of a Drosophila-derived microbiota with its animal partner and the nutritional environment throughout a fly population's life cycle
J Insect Physiol.

Chassaing, O, Desse-Berset, N, Hänni, C, Hughes, S, and Berrebi, P (2016).
Phylogeography of the European sturgeon (Acipenser sturio): A critically endangered species
Mol Phylogenet Evol, 94(Pt A):346–357.

Frantz, LA, Mullin, VE, Pionnier-Capitan, M, Lebrasseur, O, Ollivier, M, Perri, A, Linderholm, A, Mattiangeli, V, Teasdale, MD, Dimopoulos, EA, Tresset, A, Duffraisse, M, McCormick, F, Bartosiewicz, L, Gál, E, Nyerges, EA, Sablin, MV, Bréhard, S, Mashkour, M, Bălăşescu, A, Gillet, B, Hughes, S, Chassaing, O, Hitte, C, Vigne, JD, Dobney, K, Hänni, C, Bradley, DG, and Larson, G (2016).
Genomic and archaeological evidence suggest a dual origin of domestic dogs
Science, 352(6290):1228–1231.

Holzer, G, Morishita, Y, Fini, JB, Lorin, T, Gillet, B, Hughes, S, Tohme, M, Deleage, G, Demeneix, B, Arvan, P, and Laudet, V (2016).
Thyroglobulin Represents a Novel Molecular Architecture of Vertebrates
J Biol Chem, 291(32):16553-66.

Lepetit, D, Gillet, B, Hughes, S, Kraaijeveld, K, and Varaldi, J (2016).
Genome Sequencing of the Behavior Manipulating Virus LbFV Reveals a Possible New Virus Family
Genome Biol Evol, 8(12):3718-3739.

Martino, ME, Bayjanov, JR, Caffrey, BE, Wels, M, Joncour, P, Hughes, S, Gillet, B, Kleerebezem, M, van Hijum, SA, and Leulier, F (2016).
Nomadic lifestyle of Lactobacillus plantarum revealed by comparative genomics of 54 strains isolated from different habitats
Environ Microbiol, 18(12):4974-4989.

Martino, ME, Bayjanov, JR, Joncour, P, Hughes, S, Gillet, B, Kleerebezem, M, Siezen, R, van Hijum, SA, and Leulier, F (2015).
Nearly Complete Genome Sequence of Lactobacillus plantarum Strain NIZO2877
Genome Announc, 3(6).

Martino, ME, Bayjanov, JR, Joncour, P, Hughes, S, Gillet, B, Kleerebezem, M, Siezen, R, van Hijum, SA, and Leulier, F (2015).
Resequencing of the Lactobacillus plantarum Strain WJL Genome
Genome Announc, 3(6).

Guyot, R, Chatonnet, F, Gillet, B, Hughes, S, and Flamant, F (2014).
Toxicogenomic analysis of the ability of brominated flame retardants TBBPA and BDE-209 to disrupt thyroid hormone signaling in neural cells
Toxicology, 325:125-32.

Samarut, E, Gaudin, C, Hughes, S, Gillet, B, de Bernard, S, Jouve, PE, Buffat, L, Allot, A, Lecompte, O, Berekelya, L, Rochette-Egly, C, and Laudet, V (2014).
Retinoic acid receptor subtype-specific transcriptotypes in the early zebrafish embryo
Mol Endocrinol, 28(2):260-72.