2022

CNN-based cell analysis: from image to quantitative representation: Author(s) : Allier C, Hervé L, Paviolo C, Mandula O, Cioni O, Pierré W, Andriani F, Padmanabhan K, Morales S,; Journal : Frontiers in Physics, Optics and Photonics; 2022
The Clock Takes Shape—24 h Dynamics in Genome Topology: Author(s) : Tartour K, Padmanabhan K,; Journal : Frontiers in Cell and Developmental Biology; 2022
Leg length and bristle density, both necessary for water surface locomotion, are genetically correlated in water striders: Author(s) : Finet C, Decaras A, Rutkowska M, Roux P, Collaudin S, Joncour P, Viala S, Khila A,; Journal : Proc Natl Acad Sci U S A; 2022
Prenatal exposure to paraquat and nanoscaled TiO2 aerosols alters the gene expression of the developing brain: Author(s) : Hamdaoui Q, Zekri Y, Richard S, Aubert D, Guyot R, Markossian S, Gauthier K, Gaie-Levrel F, Bencsik A, Flamant F,; Journal : Chemosphere; 2022
Tracking cell lineages in 3D by incremental deep learning: Author(s) : Sugawara K, Çevrim C, Averof M,; Journal : Elife; 2022
DltC acts as an interaction hub for AcpS, DltA and DltB in the teichoic acid D-alanylation pathway of Lactiplantibacillus plantarum: Author(s) : Nikolopoulos N, Matos R, Courtin P, Ayala I, Akherraz H, Simorre J, Chapot-Chartier M, Leulier F, Ravaud S, Grangeasse C,; Journal : Sci Rep; 2022
Approaches to discern if microbiome associations reflect causation in metabolic and immune disorders: Author(s) : Basic M, Dardevet D, Abuja P, Bolsega S, Bornes S, Caesar R, Calabrese F, Collino M, De Angelis M, rard P, Gueimonde M, Leulier F, Untersmayr E, Van Rymenant E, De Vos P, Savary-Auzeloux I,; Journal : Gut Microbes; 2022
Genomics of the semi-aquatic bugs (Heteroptera; Gerromorpha): recent advances toward establishing a model lineage for the study of phenotypic evolution: Author(s) : Armisén D, Khila A,; Journal : Curr Opin Insect Sci; 2022
Transcriptome-based Phylogeny of the Semi-aquatic Bugs (Hemiptera: Heteroptera: Gerromorpha) Reveals Patterns of Lineage Expansion in a Series of New Adaptive Zones: Author(s) : Armisén D, Viala S, Cordeiro I, Crumière A, Hendaoui E, Le Bouquin A, Duchemin W, Santos E, Toubiana W, Vargas-Lowman A, Burguez Floriano C, Polhemus D, Wang Y, Rowe L, Moreira F, Khila A,; Journal : Mol Biol Evol; 2022
Hide and seek shark teeth in Random Forests: Machine learning applied to Scyliorhinus canicula: Author(s) : Berio F, Bayle Y, Baum D, Goudemand N, Debiais-Thibaud M,; Journal : PeerJ; 2022
Temperature-driven heterochrony as a main evolutionary response to climate changes in conodonts: Author(s) : Souquet L, Guenser P, Girard C, Mazza M, Rigo M, Goudemand N,; Journal : Proc Biol Sci; 2022
Mammalian PERIOD2 regulates H2A.Z incorporation in chromatin to orchestrate circadian negative feedback: Author(s) : Tartour K, Andriani F, Folco E, Letkova D, Schneider R, Saidi I, Sato T, Welz P, Benitah S, Allier C, Padmanabhan K,; Journal : Nat Struct Mol Biol; 2022
Oppositional poly(A) tail length regulation by FMRP and CPEB1: Author(s) : Shin J, Paek K, Chikhaoui L, Jung S, Ponny S, Suzuki Y, Padmanabhan K, Richter J,; Journal : RNA; 2022
The myotendinous junction marker collagen XXII enables zebrafish postural control learning and optimal swimming performance through its force transmission activity: Author(s) : Malbouyres M, Guiraud A, Lefrançois C, Salamito M, Nauroy P, Bernard L, Sohm F, Allard B, Ruggiero F,; Journal : Matrix Biol; 2022
Post-transcriptional regulation of transcription factor codes in immature neurones drives neuronal diversity: Author(s) : Guan W, Bellemin S, Bouchet M, Venkatasubramanian L, Guillermin C, Laurençon A, Kabir C, Darnas A, Godin C, Urdy S, Mann R, Enriquez J,; Journal : Cell Reports; 2022
Brown adipocytes local response to thyroid hormone is required for adaptive thermogenesis in adult male mice: Author(s) : Zekri Y, Guyot R, Suñer I, Canaple L, Stein A, Petit J, Aubert D, Richard S, Flamant F, Gauthier K,; Journal : Elife; 2022
Functional definition of thyroid hormone response elements based on a synthetic STARR-seq screen: Author(s) : Flamant F, Zekri Y, Guyot R,; Journal : Endocrinology; 2022
Integrating transcription and splicing into cell fate: Transcription factors on the block: Author(s) : Boumpas P, Merabet S, Carnesecchi J,; Journal : Wiley Interdiscip Rev RNA; 2022
Crustacean leg regeneration restores complex microanatomy and cell diversity: Author(s) : Almazán A, Çevrim C, Musser J, Averof M, Paris M,; Journal : Sci Adv; 2022
BTG1 inactivation drives lymphomagenesis and promotes lymphoma dissemination through activation of BCAR1: Author(s) : Delage L, Lambert M, Bardel E, Kundlacz C, Chartoire D, Conchon A, Peugnet A, Gorka L, Auberger P, Jacquel A, Soussain C, Destaing O, Delecluse H, Delecluse S, Merabet S, Traverse-Glehen A, Salles G, Bachy E, Billaud M, Ghesquieres H, Genestier L, Rouault J, Sujobert P,; Journal : Blood; 2022
The crustacean model Parhyale hawaiensis: Author(s) : Paris M, Wolff C, Patel N, Averof M,; Journal : Curr Top Dev Biol; 2022
Superfast excitation-contraction coupling in adult zebrafish skeletal muscle fibers: Author(s) : Idoux R, Bretaud S, Berthier C, Ruggiero F, Jacquemond V, Allard B,; Journal : J Gen Physiol; 2022
Distinct gene expression dynamics in developing and regenerating crustacean limbs: Author(s) : Sinigaglia C, Almazán A, Lebel M, Sémon M, Gillet B, Hughes S, Edsinger E, Averof M, Paris M,; Journal : Proc Natl Acad Sci U S A; 2022
A disease-associated mutation in thyroid hormone receptor α1 causes hearing loss and sensory hair cell patterning defects in mice: Author(s) : Affortit C, Blanc F, Nasr J, Ceccato J, Markossian S, Guyot R, Puel J, Flamant F, Wang J,; Journal : Sci Signal; 2022
An Atlas of Thyroid Hormone Receptors' Target Genes in Mouse Tissues: Author(s) : Zekri Y, Guyot R, Flamant F,; Journal : Int J Mol Sci; 2022
The neurodevelopmental gene MSANTD2 belongs to a gene family formed by recurrent molecular domestication of Harbinger transposons at the base of vertebrates: Author(s) : Etchegaray E, Baas D, Naville M, Haftek-Terreau Z, Volff J,; Journal : Mol Biol Evol; 2022
ERRα coordinates actin and focal adhesion dynamics: Author(s) : Tribollet V, Cerutti C, Géloën A, Berger E, De Mets R, Balland M, Courchet J, Vanacker J, Forcet C,; Journal : Cancer Gene Ther; 2022
Computational identification of new potential transcriptional partners of ERRα in breast cancer cells: specific partners for specific targets: Author(s) : Cerutti C, Zhang L, Tribollet V, Shi J, Brillet R, Gillet B, Hughes S, Forcet C, Shi T, Vanacker J,; Journal : Sci Rep; 2022

Sections

2022

CNN-based cell analysis: from image to quantitative representation

The Clock Takes Shape—24 h Dynamics in Genome Topology

Leg length and bristle density, both necessary for water surface locomotion, are genetically correlated in water striders

Prenatal exposure to paraquat and nanoscaled TiO2 aerosols alters the gene expression of the developing brain

Tracking cell lineages in 3D by incremental deep learning

DltC acts as an interaction hub for AcpS, DltA and DltB in the teichoic acid D-alanylation pathway of Lactiplantibacillus plantarum

Approaches to discern if microbiome associations reflect causation in metabolic and immune disorders

Genomics of the semi-aquatic bugs (Heteroptera; Gerromorpha): recent advances toward establishing a model lineage for the study of phenotypic evolution

Transcriptome-based Phylogeny of the Semi-aquatic Bugs (Hemiptera: Heteroptera: Gerromorpha) Reveals Patterns of Lineage Expansion in a Series of New Adaptive Zones

Hide and seek shark teeth in Random Forests: Machine learning applied to Scyliorhinus canicula

Temperature-driven heterochrony as a main evolutionary response to climate changes in conodonts

Mammalian PERIOD2 regulates H2A.Z incorporation in chromatin to orchestrate circadian negative feedback

Oppositional poly(A) tail length regulation by FMRP and CPEB1

The myotendinous junction marker collagen XXII enables zebrafish postural control learning and optimal swimming performance through its force transmission activity

Post-transcriptional regulation of transcription factor codes in immature neurones drives neuronal diversity

Brown adipocytes local response to thyroid hormone is required for adaptive thermogenesis in adult male mice

Functional definition of thyroid hormone response elements based on a synthetic STARR-seq screen

Integrating transcription and splicing into cell fate: Transcription factors on the block

Crustacean leg regeneration restores complex microanatomy and cell diversity

BTG1 inactivation drives lymphomagenesis and promotes lymphoma dissemination through activation of BCAR1

The crustacean model Parhyale hawaiensis

Superfast excitation-contraction coupling in adult zebrafish skeletal muscle fibers

Distinct gene expression dynamics in developing and regenerating crustacean limbs

A disease-associated mutation in thyroid hormone receptor α1 causes hearing loss and sensory hair cell patterning defects in mice

An Atlas of Thyroid Hormone Receptors' Target Genes in Mouse Tissues

The neurodevelopmental gene MSANTD2 belongs to a gene family formed by recurrent molecular domestication of Harbinger transposons at the base of vertebrates

ERRα coordinates actin and focal adhesion dynamics

Computational identification of new potential transcriptional partners of ERRα in breast cancer cells: specific partners for specific targets

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