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Bibliography

References to publications, sorted by year and author.

Alwes, F, Enjolras, C, and Averof, M (2016).
Live imaging reveals the progenitors and cell dynamics of limb regeneration.
Elife, 5.

Arbogast, P, Flamant, F, Godement, P, Glosmann, M, and Peichl, L (2016).
Thyroid Hormone Signaling in the Mouse Retina
PLoS One, 11(12):e0168003.

Benoit, JB, Adelman, ZN, Reinhardt, K, Dolan, A, Poelchau, M, Jennings, EC, Szuter, EM, Hagan, RW, Gujar, H, Shukla, JN, Zhu, F, Mohan, M, Nelson, DR, Rosendale, AJ, Derst, C, Resnik, V, Wernig, S, Menegazzi, P, Wegener, C, Peschel, N, Hendershot, JM, Blenau, W, Predel, R, Johnston, PR, Ioannidis, P, Waterhouse, RM, Nauen, R, Schorn, C, Ott, MC, Maiwald, F, Johnston, JS, Gondhalekar, AD, Scharf, ME, Peterson, BF, Raje, KR, Hottel, BA, Armisen, D, Crumiere, AJ, Refki, PN, Santos, ME, Sghaier, E, Viala, S, Khila, A, Ahn, SJ, Childers, C, Lee, CY, Lin, H, Hughes, DS, Duncan, EJ, Murali, SC, Qu, J, Dugan, S, Lee, SL, Chao, H, Dinh, H, Han, Y, Doddapaneni, H, Worley, KC, Muzny, DM, Wheeler, D, Panfilio, KA, Vargas Jentzsch, IM, Vargo, EL, Booth, W, Friedrich, M, Weirauch, MT, Anderson, MA, Jones, JW, Mittapalli, O, Zhao, C, Zhou, JJ, Evans, JD, Attardo, GM, Robertson, HM, Zdobnov, EM, Ribeiro, JM, Gibbs, RA, Werren, JH, Palli, SR, Schal, C, and Richards, S (2016).
Unique features of a global human ectoparasite identified through sequencing of the bed bug genome
Nat Commun, 7:10165.

Bondanese, VP, Lamboux, A, Simon, M, Lafont, JE, Albalat, E, Pichat, S, Vanacker, JM, Telouk, P, Balter, V, Oger, P, and Albarede, F (2016).
Hypoxia induces copper stable isotope fractionation in hepatocellular carcinoma, in a HIF-independent manner
Metallomics, 8(11):1177-1184.

Braasch, I, Gehrke, AR, Smith, JJ, Kawasaki, K, Manousaki, T, Pasquier, J, Amores, A, Desvignes, T, Batzel, P, Catchen, J, Berlin, AM, Campbell, MS, Barrell, D, Martin, KJ, Mulley, JF, Ravi, V, Lee, AP, Nakamura, T, Chalopin, D, Fan, S, Wcisel, D, Canestro, C, Sydes, J, Beaudry, FE, Sun, Y, Hertel, J, Beam, MJ, Fasold, M, Ishiyama, M, Johnson, J, Kehr, S, Lara, M, Letaw, JH, Litman, GW, Litman, RT, Mikami, M, Ota, T, Saha, NR, Williams, L, Stadler, PF, Wang, H, Taylor, JS, Fontenot, Q, Ferrara, A, Searle, SM, Aken, B, Yandell, M, Schneider, I, Yoder, JA, Volff, JN, Meyer, A, Amemiya, CT, Venkatesh, B, Holland, PW, Guiguen, Y, Bobe, J, Shubin, NH, Di Palma, F, Alfoldi, J, Lindblad-Toh, K, and Postlethwait, JH (2016).
The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons
Nat Genet, 48(4):427-37.

Brosse, M, Bucher, H, and Goudemand, N (2016).
Quantitative biochronology of the Permian-Triassic boundary in South China based on conodont unitary associations
Earth-Science Reviews, 155:153-171.

Brunet, FG, Volff, JN, and Schartl, M (2016).
Whole Genome Duplications Shaped the Receptor Tyrosine Kinase Repertoire of Jawed Vertebrates
Genome Biol Evol, 8(5):1600-13.

Carnesecchi, J and Vanacker, JM (2016).
Estrogen-Related Receptors and the control of bone cell fate
Mol Cell Endocrinol, 432:37-43.

Chassaing, O, Desse-Berset, N, Hänni, C, Hughes, S, and Berrebi, P (2016).
Phylogeography of the European sturgeon (Acipenser sturio): A critically endangered species
Mol Phylogenet Evol, 94(Pt A):346–357.

Crumiere, AJJ, Santos, ME, Semon, M, Armisen, D, Moreira, FFF, and Khila, A (2016).
Diversity in Morphology and Locomotory Behavior Is Associated with Niche Expansion in the Semi-aquatic Bugs
Curr Biol, 26(24):3336-3342.

Finan, B, Clemmensen, C, Zhu, Z, Stemmer, K, Gauthier, K, Muller, L, De Angelis, M, Moreth, K, Neff, F, Perez-Tilve, D, Fischer, K, Lutter, D, Sanchez-Garrido, MA, Liu, P, Tuckermann, J, Malehmir, M, Healy, ME, Weber, A, Heikenwalder, M, Jastroch, M, Kleinert, M, Jall, S, Brandt, S, Flamant, F, Schramm, KW, Biebermann, H, Doring, Y, Weber, C, Habegger, KM, Keuper, M, Gelfanov, V, Liu, F, Kohrle, J, Rozman, J, Fuchs, H, Gailus-Durner, V, Hrabe de Angelis, M, Hofmann, SM, Yang, B, Tschop, MH, DiMarchi, R, and Muller, TD (2016).
Chemical Hybridization of Glucagon and Thyroid Hormone Optimizes Therapeutic Impact for Metabolic Disease
Cell, 167(3):843-857 e14.

Flamant, F (2016).
Futures Challenges in Thyroid Hormone Signaling Research
Front Endocrinol (Lausanne), 7:58.

Frantz, LA, Mullin, VE, Pionnier-Capitan, M, Lebrasseur, O, Ollivier, M, Perri, A, Linderholm, A, Mattiangeli, V, Teasdale, MD, Dimopoulos, EA, Tresset, A, Duffraisse, M, McCormick, F, Bartosiewicz, L, Gál, E, Nyerges, EA, Sablin, MV, Bréhard, S, Mashkour, M, Bălăşescu, A, Gillet, B, Hughes, S, Chassaing, O, Hitte, C, Vigne, JD, Dobney, K, Hänni, C, Bradley, DG, and Larson, G (2016).
Genomic and archaeological evidence suggest a dual origin of domestic dogs
Science, 352(6290):1228–1231.

Fraune, J, Brochier-Armanet, C, Alsheimer, M, Volff, JN, Schucker, K, and Benavente, R (2016).
Evolutionary history of the mammalian synaptonemal complex
Chromosoma, 125(3):355-60.

Ghavi-Helm, Y, Klein, FA, Pakozdi, T, Ciglar, L, Noordermeer, D, Huber, W, and Furlong, EEM (2016).
Corrigendum: Enhancer loops appear stable during development and are associated with paused polymerase.
Nature, 537(7619):254.

Ghavi-Helm, Y, Zhao, B, and Furlong, EEM (2016).
Chromatin Immunoprecipitation for Analyzing Transcription Factor Binding and Histone Modifications in Drosophila.
Methods Mol Biol, 1478:263-277.

Grillo, M, Konstantinides, N, and Averof, M (2016).
Old questions, new models: unraveling complex organ regeneration with new experimental approaches.
Curr Opin Genet Dev, 40:23-31.

Griveau, A, Devailly, G, Eberst, L, Navaratnam, N, Le Calve, B, Ferrand, M, Faull, P, Augert, A, Dante, R, Vanacker, JM, Vindrieux, D, and Bernard, D (2016).
The PLA2R1-JAK2 pathway upregulates ERRalpha and its mitochondrial program to exert tumor-suppressive action
Oncogene, 35(38):5033-42.

Guillon, E, Bretaud, S, and Ruggiero, F (2016).
Slow Muscle Precursors Lay Down a Collagen XV Matrix Fingerprint to Guide Motor Axon Navigation
J Neurosci, 36(9):2663-76.

Gutierrez-Mazariegos, J, Nadendla, EK, Studer, RA, Alvarez, S, de Lera, AR, Kuraku, S, Bourguet, W, Schubert, M, and Laudet, V (2016).
Evolutionary diversification of retinoic acid receptor ligand-binding pocket structure by molecular tinkering
R Soc Open Sci, 3(3):150484.

Holzer, G, Morishita, Y, Fini, JB, Lorin, T, Gillet, B, Hughes, S, Tohme, M, Deleage, G, Demeneix, B, Arvan, P, and Laudet, V (2016).
Thyroglobulin Represents a Novel Molecular Architecture of Vertebrates
J Biol Chem, 291(32):16553-66.

Kao, D, Lai, AG, Stamataki, E, Rosic, S, Konstantinides, N, Jarvis, E, Di Donfrancesco, A, Pouchkina-Stancheva, N, Semon, M, Grillo, M, Bruce, H, Kumar, S, Siwanowicz, I, Le, A, Lemire, A, Eisen, MB, Extavour, C, Browne, WE, Wolff, C, Averof, M, Patel, NH, Sarkies, P, Pavlopoulos, A, and Aboobaker, A (2016).
The genome of the crustacean Parhyale hawaiensis, a model for animal development, regeneration, immunity and lignocellulose digestion.
Elife, 5.

Lepetit, D, Gillet, B, Hughes, S, Kraaijeveld, K, and Varaldi, J (2016).
Genome Sequencing of the Behavior Manipulating Virus LbFV Reveals a Possible New Virus Family
Genome Biol Evol, 8(12):3718-3739.

Li, L, Bonneton, F, Tohme, M, Bernard, L, Chen, XY, and Laudet, V (2016).
In Vivo Screening Using Transgenic Zebrafish Embryos Reveals New Effects of HDAC Inhibitors Trichostatin A and Valproic Acid on Organogenesis
PLoS One, 11(2):e0149497.

Markossian, S and Flamant, F (2016).
CRISPR/Cas9: a breakthrough in generating mouse models for endocrinologists
J Mol Endocrinol, 57(2):R81-92.