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News and job offers
24-29 June 2024
30 May 2024
ERC-funded post-doc position in computer sciences
3D modelling of changes in cell division orientation in brown algae
Location: Institute of functional genomics in Lyon (IGFL), ENS de Lyon, 69007 Lyon, France. http://igfl.ens-lyon.fr/igfl/presentation-igfl?set_language=en&cl=en
Team: Morphogenesis of brown algae: http://igfl.ens-lyon.fr/equipes/b.-charrier-morphogenese-des-algues-brunes
Supervision: Bénédicte Charrier (team leader); benedicte.charrier@cnrs.fr
Duration: 24 months - possibility to extend to 36 months
Salary: between 27 k€ and 39 k€ net (including health and unemployment insurance) depending on experience (0 to 7 years' post-doctoral experience; based on standard CNRS salaries).
Deadline: Applications will be reviewed on a rolling basis until the position is filled.
General aim:
The overall aim of the ERC “ALTER e-GROW” project is to identify the factors that control the change in the orientation of cell divisions during the development of brown algal embryos. It is based on 3D mapping of the geometry and topology of cells and intracellular components during the development of four brown algae, all specific to these marine multicellular organisms. The aim is to build and validate force-driven physical models of cell growth and division by simulating in silico how the interplay between cell 3D geometry, cell components and cell-cell interactions determine changes in the orientation of cell division. The models are intended to reflect the dynamics of the system as observed by the experimentalists of the team.
Previous modelling work of the team: https://doi.org/10.1371/journal.pbio.2005258; https://www.youtube.com/watch?v=w9agWqAX6vM; http://dx.doi.org/10.1098/rsif.2016.0596; https://doi.org/10.1071/FP08036; https://doi.org/10.1105/tpc.110.081919
Skills:
She/he will have experience as a scientific software developer, with interest in 3D mechanical simulation as a tool to apprehend cellular processes. The project requires an advanced knowledge in cell and/or developmental biology. In the team, she/he will work in constant interaction with experimentalists, tightly involved in the conception and evaluation of the models. As the majority of data comes from microscope observations, and the output is expected to consist in part of simulation images, skills in image processing and computer graphics will be a plus.
How to apply :
Interested candidates should submit a single PDF file containing a cover letter with a brief statement of research interests and career goals, a curriculum vitae, and contact information for up to three references to benedicte.charrier@cnrs.fr. Please include "Post-Doc 3D Modelling Brown Algae" in the subject line of the email.
20 February 2024
Job offer: A 3-year post-doc in cell and developmental biology (mainly live-imaging) to join the team on 1 June 2024. For more details on the job profile:
20 January 2024
Outreach: "From the ocean to the lab". In partnership with the Tara Ocean Foundation, our team shared its brown algae models and current research to the general public.
15 November 2023
We make the cover page of Development ! Showing the transition from which two different organs differentiate: the flat lamella at the top, the cylindrical stipe at the bottom. The epidermal layer is responsible for the overall production of this tissue ("outside-in" differentiation).
9-17 November 2023
Workshop about the photoablation of the brown alga Sphacelaria at MiFoBio at the Presqu'île de Giens, South of France. On the microscope Dragonfly 600 from Andor.
Chloroplasts (in green) are expelled from the cell targeted by the UV laser (4th cell from the tip)
27 October 2023
New publication in Development: The shift to 3D growth during embryogenesis of kelp species, atlas of cell division and differentiation of Saccharina latissima https://doi.org/10.1242/dev.201519
13 September 2023
12 September 2023
Team Morphogenesis of brown algae will recruit 2 more post-doc fellows in Winter and Spring 2024.
Stay tuned!
@Charrier_Lab_BrownAlgalDevelopment
1 September 2023
Bringing brown algae at IGFL!