Publications

Long-term live imaging, cell identification and cell tracking in regenerating crustacean legs: Author(s) : Çevrim �, Laplace-Builhé B, Sugawara K, Lorenza Rusciano M, Labert N, Brocard J, Almazán A, Averof M,; Journal : bioRxiv; 2024
Tracking cell lineages in 3D by incremental deep learning: Author(s) : Sugawara K, Çevrim C, Averof M,; Journal : Elife; 2022
Crustacean leg regeneration restores complex microanatomy and cell diversity: Author(s) : Almazán A, Çevrim C, Musser J, Averof M, Paris M,; Journal : Sci Adv; 2022
The crustacean model Parhyale hawaiensis: Author(s) : Paris M, Wolff C, Patel N, Averof M,; Journal : Curr Top Dev Biol; 2022
Distinct gene expression dynamics in developing and regenerating crustacean limbs: Author(s) : Sinigaglia C, Almazán A, Lebel M, Sémon M, Gillet B, Hughes S, Edsinger E, Averof M, Paris M,; Journal : Proc Natl Acad Sci U S A; 2022
The multifaceted role of nerves in animal regeneration: Author(s) : Sinigaglia C, Averof M,; Journal : Current Opinion in Genetics & Development; 2019
Clonal analysis by tunable CRISPR-mediated excision.: Author(s) : Gilles A, Schinko J, Schacht M, Enjolras C, Averof M,; Journal : Development; 2019
Repeated co-option of a conserved gene regulatory module underpins the evolution of the crustacean carapace, insect wings and other flat outgrowths: Author(s) : Shiga Y, Kato Y, Aragane-Nomura Y, Haraguchi T, Saridaki T, Watanabe H, Iguchi T, Yamagata H, Averof M,; Journal : bioRxiv; 2017
Old questions, new models: unraveling complex organ regeneration with new experimental approaches.: Author(s) : Grillo M, Konstantinides N, Averof M,; Journal : Curr Opin Genet Dev; 2016
Live imaging reveals the progenitors and cell dynamics of limb regeneration.: Author(s) : Alwes F, Enjolras C, Averof M,; Journal : Elife; 2016
The genome of the crustacean Parhyale hawaiensis, a model for animal development, regeneration, immunity and lignocellulose digestion.: Author(s) : Kao D, Lai A, Stamataki E, Rosic S, Konstantinides N, Jarvis E, Di Donfrancesco A, Pouchkina-Stancheva N, Semon M, Grillo M, Bruce H, Kumar S, Siwanowicz I, Le A, Lemire A, Eisen M, Extavour C, Browne W, Wolff C, Averof M, Patel N, Sarkies P, Pavlopoulos A, Aboobaker A,; Journal : Elife; 2016
Efficient CRISPR-mediated gene targeting and transgene replacement in the beetle Tribolium castaneum.: Author(s) : Gilles A, Schinko J, Averof M,; Journal : Development; 2015
A common cellular basis for muscle regeneration in arthropods and vertebrates.: Author(s) : Konstantinides N, Averof M,; Journal : Science; 2014
Development: a deep breath for endocrine organ evolution.: Author(s) : Grillo M, Casanova J, Averof M,; Journal : Curr Biol; 2014
Functional genetics for all: engineered nucleases, CRISPR and the gene editing revolution.: Author(s) : Gilles A, Averof M,; Journal : Evodevo; 2014
MicroRNAs act as cofactors in bicoid-mediated translational repression.: Author(s) : Rodel C, Gilles A, Averof M,; Journal : Curr Biol; 2013
A segmentation clock operating in blastoderm and germband stages of Tribolium development: Author(s) : El-Sherif E, Averof M, Brown S,; Journal : Development; 2012
A segmentation clock with two-segment periodicity in insects: Author(s) : Sarrazin A, Peel A, Averof M,; Journal : Science; 2012
Reconfiguring gene traps for new tasks using iTRAC: Author(s) : Kontarakis Z, Konstantinides N, Pavlopoulos A, Averof M,; Journal : Fly (Austin); 2011
A versatile strategy for gene trapping and trap conversion in emerging model organisms: Author(s) : Kontarakis Z, Pavlopoulos A, Kiupakis A, Konstantinides N, Douris V, Averof M,; Journal : Development; 2011
Evidence for multiple independent origins of trans-splicing in Metazoa: Author(s) : Douris V, Telford M, Averof M,; Journal : Mol Biol Evol; 2010
EGF signaling and the origin of axial polarity among the insects: Author(s) : Lynch J, Peel A, Drechsler A, Averof M, Roth S,; Journal : Curr Biol; 2010
Early asymmetries in maternal transcript distribution associated with a cortical microtubule network and a polar body in the beetle Tribolium castaneum: Author(s) : Peel A, Averof M,; Journal : Dev Dyn; 2010
Functionality of the GAL4/UAS system in Tribolium requires the use of endogenous core promoters: Author(s) : Schinko J, Weber M, Viktorinova I, Kiupakis A, Averof M, Klingler M, Wimmer E, Bucher G,; Journal : BMC Dev Biol; 2010
Knockdown of Parhyale Ultrabithorax recapitulates evolutionary changes in crustacean appendage morphology: Author(s) : Liubicich D, Serano J, Pavlopoulos A, Kontarakis Z, Protas M, Kwan E, Chatterjee S, Tran K, Averof M, Patel N,; Journal : Proc Natl Acad Sci U S A; 2009
Probing the evolution of appendage specialization by Hox gene misexpression in an emerging model crustacean: Author(s) : Pavlopoulos A, Kontarakis Z, Liubicich D, Serano J, Akam M, Patel N, Averof M,; Journal : Proc Natl Acad Sci U S A; 2009
Knockdown of spalt function by RNAi causes de-repression of Hox genes and homeotic transformations in the crustacean Artemia franciscana: Author(s) : Copf T, Rabet N, Averof M,; Journal : Dev Biol; 2006
Association of tracheal placodes with leg primordia in Drosophila and implications for the origin of insect tracheal systems: Author(s) : Franch-Marro X, Martin N, Averof M, Casanova J,; Journal : Development; 2006
Expression of hunchback during trunk segmentation in the branchiopod crustacean Artemia franciscana: Author(s) : Kontarakis Z, Copf T, Averof M,; Journal : Dev Genes Evol; 2006
Establishing genetic transformation for comparative developmental studies in the crustacean Parhyale hawaiensis: Author(s) : Pavlopoulos A, Averof M,; Journal : Proc Natl Acad Sci U S A; 2005
Ancestral role of caudal genes in axis elongation and segmentation: Author(s) : Copf T, Schroder R, Averof M,; Journal : Proc Natl Acad Sci U S A; 2004
Efficient transformation of the beetle Tribolium castaneum using the Minos transposable element: quantitative and qualitative analysis of genomic integration events: Author(s) : Pavlopoulos A, Berghammer A, Averof M, Klingler M,; Journal : Genetics; 2004
Posterior patterning genes and the identification of a unique body region in the brine shrimp Artemia franciscana: Author(s) : Copf T, Rabet N, Celniker S, Averof M,; Journal : Development; 2003
Arthropod Hox genes: insights on the evolutionary forces that shape gene functions: Author(s) : Averof M,; Journal : Curr Opin Genet Dev; 2002
Diverse adaptations of an ancestral gill: a common evolutionary origin for wings, breathing organs, and spinnerets: Author(s) : Damen W, Saridaki T, Averof M,; Journal : Curr Biol; 2002
Developmental evolution: Hox proteins ring the changes: Author(s) : Pavlopoulos A, Averof M,; Journal : Curr Biol; 2002
Specification of left-right asymmetry in the embryonic gut of Drosophila: Author(s) : Ligoxygakis P, Strigini M, Averof M,; Journal : Development; 2001
Evidence for a high frequency of simultaneous double-nucleotide substitutions: Author(s) : Averof M, Rokas A, Wolfe K, Sharp P,; Journal : Science; 2000
Evolutionary biology. Origin of the spider's head: Author(s) : Averof M,; Journal : Nature; 1998
Arthropod evolution: same Hox genes, different body plans: Author(s) : Averof M,; Journal : Curr Biol; 1997
Evolutionary origin of insect wings from ancestral gills: Author(s) : Averof M, Cohen S,; Journal : Nature; 1997
Crustacean appendage evolution associated with changes in Hox gene expression: Author(s) : Averof M, Patel N,; Journal : Nature; 1997
Reply from d. Osorio et Al: Author(s) : Osorio D, Averof M, Bacon J,; Journal : Trends Ecol Evol; 1996
Hox genes and the diversification of insect and crustacean body plans: Author(s) : Averof M, Akam M,; Journal : Nature; 1995
Arthropod evolution: great brains, beautiful bodies: Author(s) : Osorio D, Averof M, Bacon J,; Journal : Trends Ecol Evol; 1995
DNA sequence evolution: the sounds of silence: Author(s) : Sharp P, Averof M, Lloyd A, Matassi G, Peden J,; Journal : Philos Trans R Soc Lond B Biol Sci; 1995
The evolving role of Hox genes in arthropods: Author(s) : Akam M, Averof M, Castelli-Gair J, Dawes R, Falciani F, Ferrier D,; Journal : Dev Suppl; 1994
HOM/Hox genes of Artemia: implications for the origin of insect and crustacean body plans: Author(s) : Averof M, Akam M,; Journal : Curr Biol; 1993

Sections

Publications

Long-term live imaging, cell identification and cell tracking in regenerating crustacean legs

Tracking cell lineages in 3D by incremental deep learning

Crustacean leg regeneration restores complex microanatomy and cell diversity

The crustacean model Parhyale hawaiensis

Distinct gene expression dynamics in developing and regenerating crustacean limbs

The multifaceted role of nerves in animal regeneration

Clonal analysis by tunable CRISPR-mediated excision.

Repeated co-option of a conserved gene regulatory module underpins the evolution of the crustacean carapace, insect wings and other flat outgrowths

Old questions, new models: unraveling complex organ regeneration with new experimental approaches.

Live imaging reveals the progenitors and cell dynamics of limb regeneration.

The genome of the crustacean Parhyale hawaiensis, a model for animal development, regeneration, immunity and lignocellulose digestion.

Efficient CRISPR-mediated gene targeting and transgene replacement in the beetle Tribolium castaneum.

A common cellular basis for muscle regeneration in arthropods and vertebrates.

Development: a deep breath for endocrine organ evolution.

Functional genetics for all: engineered nucleases, CRISPR and the gene editing revolution.

MicroRNAs act as cofactors in bicoid-mediated translational repression.

A segmentation clock operating in blastoderm and germband stages of Tribolium development

A segmentation clock with two-segment periodicity in insects

Reconfiguring gene traps for new tasks using iTRAC

A versatile strategy for gene trapping and trap conversion in emerging model organisms

Evidence for multiple independent origins of trans-splicing in Metazoa

EGF signaling and the origin of axial polarity among the insects

Early asymmetries in maternal transcript distribution associated with a cortical microtubule network and a polar body in the beetle Tribolium castaneum

Functionality of the GAL4/UAS system in Tribolium requires the use of endogenous core promoters

Knockdown of Parhyale Ultrabithorax recapitulates evolutionary changes in crustacean appendage morphology

Probing the evolution of appendage specialization by Hox gene misexpression in an emerging model crustacean

Knockdown of spalt function by RNAi causes de-repression of Hox genes and homeotic transformations in the crustacean Artemia franciscana

Association of tracheal placodes with leg primordia in Drosophila and implications for the origin of insect tracheal systems

Expression of hunchback during trunk segmentation in the branchiopod crustacean Artemia franciscana

Establishing genetic transformation for comparative developmental studies in the crustacean Parhyale hawaiensis

Ancestral role of caudal genes in axis elongation and segmentation

Efficient transformation of the beetle Tribolium castaneum using the Minos transposable element: quantitative and qualitative analysis of genomic integration events

Posterior patterning genes and the identification of a unique body region in the brine shrimp Artemia franciscana

Arthropod Hox genes: insights on the evolutionary forces that shape gene functions

Diverse adaptations of an ancestral gill: a common evolutionary origin for wings, breathing organs, and spinnerets

Developmental evolution: Hox proteins ring the changes

Specification of left-right asymmetry in the embryonic gut of Drosophila

Evidence for a high frequency of simultaneous double-nucleotide substitutions

Evolutionary biology. Origin of the spider's head

Arthropod evolution: same Hox genes, different body plans

Evolutionary origin of insect wings from ancestral gills

Crustacean appendage evolution associated with changes in Hox gene expression

Reply from d. Osorio et Al

Hox genes and the diversification of insect and crustacean body plans

Arthropod evolution: great brains, beautiful bodies

DNA sequence evolution: the sounds of silence

The evolving role of Hox genes in arthropods

HOM/Hox genes of Artemia: implications for the origin of insect and crustacean body plans

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