Bibliography

Rial Pensado, E, Canaple, L, Guyot, R, Clemmensen, C, Wiersema, J, Wu, S, Richard, S, Boelen, A, D Müller, T, López, M, Flamant, F, and Gauthier, K (2023).
Neuronal blockade of thyroid hormone signaling increases sensitivity to diet-induced obesity in adult male mice
Endocrinology.

Salamito, M, Gillet, B, Syx, D, Vaganay, E, Malbouyres, M, Cerutti, C, Tissot, N, Exbrayat-Heritier, C, Perez, P, Jones, C, Hughes, S, Malfait, F, Haydont, V, Jäger, S, and Ruggiero, F (2023).
NRF2 shortage in human skin fibroblasts dysregulates matrisome gene expression and affects collagen fibrillogenesis
J Invest Dermatol, 43(e12):386-397.

Schwarzer, M, Gautam, UK, Makki, K, Lambert, A, Brabec, T, Joly, A, Šrůtková, D, Poinsot, P, Novotná, T, Geoffroy, S, Courtin, P, Hermanová, PP, Matos, RC, Landry, JJM, rard, C, Bulteau, AL, Hudcovic, T, Kozáková, H, Filipp, D, Chapot-Chartier, MP, inkora, M, Peretti, N, Boneca, IG, Chamaillard, M, Vidal, H, De Vadder, F, and Leulier, F (2023).
Microbe-mediated intestinal NOD2 stimulation improves linear growth of undernourished infant mice
Science, 379(6634):826–833.

Theodorou, I and Charrier, B (2023).
The shift to 3D growth during embryogenesis of kelp species, atlas of cell division and differentiation of Saccharina latissima
Development, 150(21).

Vadon-Le Goff, S, Tessier, A, Napoli, M, Dieryckx, C, Bauer, J, Dussoyer, M, Lagoutte, P, Peyronnel, C, Essayan, L, Kleiser, S, Tueni, N, Bettler, E, Mariano, N, Errazuriz-Cerda, E, Fruchart Gaillard, C, Ruggiero, F, Becker-Pauly, C, Allain, JM, Bruckner-Tuderman, L, m, A, and Moali, C (2023).
Identification of PCPE-2 as the endogenous specific inhibitor of human BMP-1/tolloid-like proteinases
Nat Commun, 14(1):8020.

Zimm, R, Berio, F, Debiais-Thibaud, M, and Goudemand, N (2023).
A shark-inspired general model of tooth morphogenesis unveils developmental asymmetries in phenotype transitions
Proc Natl Acad Sci U S A, 120(15):e2216959120.

Affortit, C, Blanc, F, Nasr, J, Ceccato, JC, Markossian, S, Guyot, R, Puel, JL, Flamant, F, and Wang, J (2022).
A disease-associated mutation in thyroid hormone receptor α1 causes hearing loss and sensory hair cell patterning defects in mice
Sci Signal, 15(738):eabj4583.

Allier, C, Hervé, L, Paviolo, C, Mandula, O, Cioni, O, Pierré, W, Andriani, F, Padmanabhan, K, and Morales, S (2022).
CNN-based cell analysis: from image to quantitative representation
Frontiers in Physics, Optics and Photonics, 9(Article 776805).

Almazán, A, Çevrim, C, Musser, JM, Averof, M, and Paris, M (2022).
Crustacean leg regeneration restores complex microanatomy and cell diversity
Sci Adv, 8(34):eabn9823.

Armisén, D and Khila, A (2022).
Genomics of the semi-aquatic bugs (Heteroptera; Gerromorpha): recent advances toward establishing a model lineage for the study of phenotypic evolution
Curr Opin Insect Sci, 50:100870.

Armisén, D, Viala, S, Cordeiro, IDRS, Crumière, AJJ, Hendaoui, E, Le Bouquin, A, Duchemin, W, Santos, E, Toubiana, W, Vargas-Lowman, A, Burguez Floriano, CF, Polhemus, DA, Wang, YH, Rowe, L, Moreira, FFF, and Khila, A (2022).
Transcriptome-based Phylogeny of the Semi-aquatic Bugs (Hemiptera: Heteroptera: Gerromorpha) Reveals Patterns of Lineage Expansion in a Series of New Adaptive Zones
Mol Biol Evol, 39(11).

Basic, M, Dardevet, D, Abuja, PM, Bolsega, S, Bornes, S, Caesar, R, Calabrese, FM, Collino, M, De Angelis, M, rard, P, Gueimonde, M, Leulier, F, Untersmayr, E, Van Rymenant, E, De Vos, P, and Savary-Auzeloux, I (2022).
Approaches to discern if microbiome associations reflect causation in metabolic and immune disorders
Gut Microbes, 14(1):2107386.

Berio, F, Bayle, Y, Baum, D, Goudemand, N, and Debiais-Thibaud, M (2022).
Hide and seek shark teeth in Random Forests: Machine learning applied to Scyliorhinus canicula
PeerJ, 10:e13575.

Boumpas, P, Merabet, S, and Carnesecchi, J (2022).
Integrating transcription and splicing into cell fate: Transcription factors on the block
Wiley Interdiscip Rev RNA:e1752.

Cerutti, C, Zhang, L, Tribollet, V, Shi, JR, Brillet, R, Gillet, B, Hughes, S, Forcet, C, Shi, TL, and Vanacker, JM (2022).
Computational identification of new potential transcriptional partners of ERRα in breast cancer cells: specific partners for specific targets
Sci Rep, 12(1):3826.

Delage, L, Lambert, M, Bardel, E, Kundlacz, C, Chartoire, D, Conchon, A, Peugnet, AL, Gorka, L, Auberger, P, Jacquel, A, Soussain, C, Destaing, O, Delecluse, HJ, Delecluse, S, Merabet, S, Traverse-Glehen, A, Salles, GA, Bachy, E, Billaud, M, Ghesquieres, H, Genestier, L, Rouault, JP, and Sujobert, P (2022).
BTG1 inactivation drives lymphomagenesis and promotes lymphoma dissemination through activation of BCAR1
Blood.

Etchegaray, E, Baas, D, Naville, M, Haftek-Terreau, Z, and Volff, JN (2022).
The neurodevelopmental gene MSANTD2 belongs to a gene family formed by recurrent molecular domestication of Harbinger transposons at the base of vertebrates
Mol Biol Evol.

Finet, C, Decaras, A, Rutkowska, M, Roux, P, Collaudin, S, Joncour, P, Viala, S, and Khila, A (2022).
Leg length and bristle density, both necessary for water surface locomotion, are genetically correlated in water striders
Proc Natl Acad Sci U S A, 119(9).

Flamant, F, Zekri, Y, and Guyot, R (2022).
Functional definition of thyroid hormone response elements based on a synthetic STARR-seq screen
Endocrinology.

Guan, W, Bellemin, S, Bouchet, M, Venkatasubramanian, L, Guillermin, C, Laurençon, A, Kabir, C, Darnas, A, Godin, C, Urdy, S, Mann, R, and Enriquez, J (2022).
Post-transcriptional regulation of transcription factor codes in immature neurones drives neuronal diversity
Cell Reports, 39:110992.

Idoux, R, Bretaud, S, Berthier, C, Ruggiero, F, Jacquemond, V, and Allard, B (2022).
Superfast excitation-contraction coupling in adult zebrafish skeletal muscle fibers
J Gen Physiol, 154(9).

Malbouyres, M, Guiraud, A, Lefrançois, C, Salamito, M, Nauroy, P, Bernard, L, Sohm, F, Allard, B, and Ruggiero, F (2022).
The myotendinous junction marker collagen XXII enables zebrafish postural control learning and optimal swimming performance through its force transmission activity
Matrix Biol, 109:1-18.

Nikolopoulos, N, Matos, RC, Courtin, P, Ayala, I, Akherraz, H, Simorre, JP, Chapot-Chartier, MP, Leulier, F, Ravaud, S, and Grangeasse, C (2022).
DltC acts as an interaction hub for AcpS, DltA and DltB in the teichoic acid D-alanylation pathway of Lactiplantibacillus plantarum
Sci Rep, 12(1):13133.

Paris, M, Wolff, C, Patel, NH, and Averof, M (2022).
The crustacean model Parhyale hawaiensis
Curr Top Dev Biol, 147:199–230.

Shin, J, Paek, KY, Chikhaoui, L, Jung, S, Ponny, S, Suzuki, Y, Padmanabhan, K, and Richter, JD (2022).
Oppositional poly(A) tail length regulation by FMRP and CPEB1
RNA, 28(5):756–765.