publications-averof

This folder holds the following references to publications, sorted by year and author.

There are 40 references in this bibliography folder.

Karapidaki, I, Momose, T, Zilliox, M, and Averof, M (2024).
A toolkit for testing membrane localisation tags across species
bioRxiv.

Çevrim, C, Laplace-Builhé, B, Sugawara, K, Lorenza Rusciano, M, Labert, N, Brocard, J, Almazán, A, and Averof, M (2024).
Long-term live imaging, cell identification and cell tracking in regenerating crustacean legs
bioRxiv.

Almazán, A, Çevrim, C, Musser, JM, Averof, M, and Paris, M (2022).
Crustacean leg regeneration restores complex microanatomy and cell diversity
Sci Adv, 8(34):eabn9823.

Paris, M, Wolff, C, Patel, NH, and Averof, M (2022).
The crustacean model Parhyale hawaiensis
Curr Top Dev Biol, 147:199–230.

Sinigaglia, C, Almazán, A, Lebel, M, Sémon, M, Gillet, B, Hughes, S, Edsinger, E, Averof, M, and Paris, M (2022).
Distinct gene expression dynamics in developing and regenerating crustacean limbs
Proc Natl Acad Sci U S A, 119(27):e2119297119.

Sugawara, K, Çevrim, C, and Averof, M (2022).
Tracking cell lineages in 3D by incremental deep learning
Elife, 11:e69380.

Gilles, AF, Schinko, JB, Schacht, MI, Enjolras, C, and Averof, M (2019).
Clonal analysis by tunable CRISPR-mediated excision.
Development, 146(1).

Sinigaglia, C and Averof, M (2019).
The multifaceted role of nerves in animal regeneration
Current Opinion in Genetics & Development, 57:98-105.

Weigert, M, Schmidt, U, Haase, R, Sugawara, K, and Myers, G (2019).
Star-convex Polyhedra for 3D Object Detection and Segmentation in Microscopy
Miscellaneous publication.

Gilles, AF, Schinko, JB, Schacht, MI, Enjolras, C, and Averof, M (2018).
Clonal analysis by tunable CRISPR-mediated excision
Preprint.

Salvador-Martínez, I, Grillo, M, Averof, M, and Telford, MJ (2018).
Is it possible to reconstruct an accurate cell lineage using CRISPR recorders?
Preprint.

Shiga, Y, Kato, Y, Aragane-Nomura, Y, Haraguchi, T, Saridaki, T, Watanabe, H, Iguchi, T, Yamagata, H, and Averof, M (2017).
Repeated co-option of a conserved gene regulatory module underpins the evolution of the crustacean carapace, insect wings and other flat outgrowths
bioRxiv.

Alwes, F, Enjolras, C, and Averof, M (2016).
Live imaging reveals the progenitors and cell dynamics of limb regeneration.
Elife, 5.

Grillo, M, Konstantinides, N, and Averof, M (2016).
Old questions, new models: unraveling complex organ regeneration with new experimental approaches.
Curr Opin Genet Dev, 40:23-31.

Kao, D, Lai, AG, Stamataki, E, Rosic, S, Konstantinides, N, Jarvis, E, Di Donfrancesco, A, Pouchkina-Stancheva, N, Semon, M, Grillo, M, Bruce, H, Kumar, S, Siwanowicz, I, Le, A, Lemire, A, Eisen, MB, Extavour, C, Browne, WE, Wolff, C, Averof, M, Patel, NH, Sarkies, P, Pavlopoulos, A, and Aboobaker, A (2016).
The genome of the crustacean Parhyale hawaiensis, a model for animal development, regeneration, immunity and lignocellulose digestion.
Elife, 5.

Gilles, AF, Schinko, JB, and Averof, M (2015).
Efficient CRISPR-mediated gene targeting and transgene replacement in the beetle Tribolium castaneum.
Development, 142(16):2832-9.

Gilles, AF and Averof, M (2014).
Functional genetics for all: engineered nucleases, CRISPR and the gene editing revolution.
Evodevo, 5:43.

Grillo, M, Casanova, J, and Averof, M (2014).
Development: a deep breath for endocrine organ evolution.
Curr Biol, 24(1):R38-40.

Konstantinides, N and Averof, M (2014).
A common cellular basis for muscle regeneration in arthropods and vertebrates.
Science, 343(6172):788-91.

Rodel, CJ, Gilles, AF, and Averof, M (2013).
MicroRNAs act as cofactors in bicoid-mediated translational repression.
Curr Biol, 23(16):1579-84.

El-Sherif, E, Averof, M, and Brown, SJ (2012).
A segmentation clock operating in blastoderm and germband stages of Tribolium development
Development, 139(23):4341-6.

Sarrazin, AF, Peel, AD, and Averof, M (2012).
A segmentation clock with two-segment periodicity in insects
Science, 336(6079):338-41.

Kontarakis, Z, Konstantinides, N, Pavlopoulos, A, and Averof, M (2011).
Reconfiguring gene traps for new tasks using iTRAC
Fly (Austin), 5(4):352-5.

Kontarakis, Z, Pavlopoulos, A, Kiupakis, A, Konstantinides, N, Douris, V, and Averof, M (2011).
A versatile strategy for gene trapping and trap conversion in emerging model organisms
Development, 138(12):2625-30.

Douris, V, Telford, MJ, and Averof, M (2010).
Evidence for multiple independent origins of trans-splicing in Metazoa
Mol Biol Evol, 27(3):684-93.