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This folder holds the following references to publications, sorted by year and author.

There are 47 references in this bibliography folder.

Sugawara, K, Çevrim, C, and Averof, M (2022).
Tracking cell lineages in 3D by incremental deep learning
Elife, 11:e69380.

Gilles, AF, Schinko, JB, Schacht, MI, Enjolras, C, and Averof, M (2019).
Clonal analysis by tunable CRISPR-mediated excision.
Development, 146(1).

Sinigaglia, C and Averof, M (2019).
The multifaceted role of nerves in animal regeneration
Current Opinion in Genetics & Development, 57:98-105.

Weigert, M, Schmidt, U, Haase, R, Sugawara, K, and Myers, G (2019).
Star-convex Polyhedra for 3D Object Detection and Segmentation in Microscopy
Miscellaneous publication.

Gilles, AF, Schinko, JB, Schacht, MI, Enjolras, C, and Averof, M (2018).
Clonal analysis by tunable CRISPR-mediated excision

Salvador-Martínez, I, Grillo, M, Averof, M, and Telford, MJ (2018).
Is it possible to reconstruct an accurate cell lineage using CRISPR recorders?

Shiga, Y, Kato, Y, Aragane-Nomura, Y, Haraguchi, T, Saridaki, T, Watanabe, H, Iguchi, T, Yamagata, H, and Averof, M (2017).
Repeated co-option of a conserved gene regulatory module underpins the evolution of the crustacean carapace, insect wings and other flat outgrowths

Alwes, F, Enjolras, C, and Averof, M (2016).
Live imaging reveals the progenitors and cell dynamics of limb regeneration.
Elife, 5.

Grillo, M, Konstantinides, N, and Averof, M (2016).
Old questions, new models: unraveling complex organ regeneration with new experimental approaches.
Curr Opin Genet Dev, 40:23-31.

Kao, D, Lai, AG, Stamataki, E, Rosic, S, Konstantinides, N, Jarvis, E, Di Donfrancesco, A, Pouchkina-Stancheva, N, Semon, M, Grillo, M, Bruce, H, Kumar, S, Siwanowicz, I, Le, A, Lemire, A, Eisen, MB, Extavour, C, Browne, WE, Wolff, C, Averof, M, Patel, NH, Sarkies, P, Pavlopoulos, A, and Aboobaker, A (2016).
The genome of the crustacean Parhyale hawaiensis, a model for animal development, regeneration, immunity and lignocellulose digestion.
Elife, 5.

Gilles, AF, Schinko, JB, and Averof, M (2015).
Efficient CRISPR-mediated gene targeting and transgene replacement in the beetle Tribolium castaneum.
Development, 142(16):2832-9.

Gilles, AF and Averof, M (2014).
Functional genetics for all: engineered nucleases, CRISPR and the gene editing revolution.
Evodevo, 5:43.

Grillo, M, Casanova, J, and Averof, M (2014).
Development: a deep breath for endocrine organ evolution.
Curr Biol, 24(1):R38-40.

Konstantinides, N and Averof, M (2014).
A common cellular basis for muscle regeneration in arthropods and vertebrates.
Science, 343(6172):788-91.

Rodel, CJ, Gilles, AF, and Averof, M (2013).
MicroRNAs act as cofactors in bicoid-mediated translational repression.
Curr Biol, 23(16):1579-84.

El-Sherif, E, Averof, M, and Brown, SJ (2012).
A segmentation clock operating in blastoderm and germband stages of Tribolium development
Development, 139(23):4341-6.

Sarrazin, AF, Peel, AD, and Averof, M (2012).
A segmentation clock with two-segment periodicity in insects
Science, 336(6079):338-41.

Kontarakis, Z, Konstantinides, N, Pavlopoulos, A, and Averof, M (2011).
Reconfiguring gene traps for new tasks using iTRAC
Fly (Austin), 5(4):352-5.

Kontarakis, Z, Pavlopoulos, A, Kiupakis, A, Konstantinides, N, Douris, V, and Averof, M (2011).
A versatile strategy for gene trapping and trap conversion in emerging model organisms
Development, 138(12):2625-30.

Douris, V, Telford, MJ, and Averof, M (2010).
Evidence for multiple independent origins of trans-splicing in Metazoa
Mol Biol Evol, 27(3):684-93.

Lynch, JA, Peel, AD, Drechsler, A, Averof, M, and Roth, S (2010).
EGF signaling and the origin of axial polarity among the insects
Curr Biol, 20(11):1042-7.

Peel, AD and Averof, M (2010).
Early asymmetries in maternal transcript distribution associated with a cortical microtubule network and a polar body in the beetle Tribolium castaneum
Dev Dyn, 239(11):2875-87.

Schinko, JB, Weber, M, Viktorinova, I, Kiupakis, A, Averof, M, Klingler, M, Wimmer, EA, and Bucher, G (2010).
Functionality of the GAL4/UAS system in Tribolium requires the use of endogenous core promoters
BMC Dev Biol, 10:53.

Liubicich, DM, Serano, JM, Pavlopoulos, A, Kontarakis, Z, Protas, ME, Kwan, E, Chatterjee, S, Tran, KD, Averof, M, and Patel, NH (2009).
Knockdown of Parhyale Ultrabithorax recapitulates evolutionary changes in crustacean appendage morphology
Proc Natl Acad Sci U S A, 106(33):13892-6.

Pavlopoulos, A, Kontarakis, Z, Liubicich, DM, Serano, JM, Akam, M, Patel, NH, and Averof, M (2009).
Probing the evolution of appendage specialization by Hox gene misexpression in an emerging model crustacean
Proc Natl Acad Sci U S A, 106(33):13897-902.

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