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Chromosome topology guides the Drosophila Dosage Compensation Complex for target gene activation

Author(s) : Schauer T, Ghavi-Helm Y, Sexton T, Albig C, Regnard C, Cavalli G, Furlong E, Becker P,
Journal : EMBO Rep
2017

Dual functionality of cis-regulatory elements as developmental enhancers and Polycomb response elements.

Author(s) : Erceg J, Pakozdi T, Marco-Ferreres R, Ghavi-Helm Y, Girardot C, Bracken A, Furlong E,
Journal : Genes Dev
2017

Corrigendum: Enhancer loops appear stable during development and are associated with paused polymerase.

Author(s) : Ghavi-Helm Y, Klein F, Pakozdi T, Ciglar L, Noordermeer D, Huber W, Furlong E,
Journal : Nature
2016

Chromatin Immunoprecipitation for Analyzing Transcription Factor Binding and Histone Modifications in Drosophila.

Author(s) : Ghavi-Helm Y, Zhao B, Furlong E,
Journal : Methods Mol Biol
2016

Identification and in silico modeling of enhancers reveals new features of the cardiac differentiation network.

Author(s) : Seyres D, Ghavi-Helm Y, Junion G, Taghli-Lamallem O, Guichard C, Roder L, Girardot C, Furlong E, Perrin L,
Journal : Development
2016

FourCSeq: analysis of 4C sequencing data.

Author(s) : Klein F, Pakozdi T, Anders S, Ghavi-Helm Y, Furlong E, Huber W,
Journal : Bioinformatics
2015

PHD and TFIIS-Like domains of the Bye1 transcription factor determine its multivalent genomic distribution.

Author(s) : Pinskaya M, Ghavi-Helm Y, Mariotte-Labarre S, Morillon A, Soutourina J, Werner M,
Journal : PLoS One
2014

Enhancer loops appear stable during development and are associated with paused polymerase.

Author(s) : Ghavi-Helm Y, Klein F, Pakozdi T, Ciglar L, Noordermeer D, Huber W, Furlong E,
Journal : Nature
2014

Genomic binding of Pol III transcription machinery and relationship with TFIIS transcription factor distribution in mouse embryonic stem cells.

Author(s) : Carriere L, Graziani S, Alibert O, Ghavi-Helm Y, Boussouar F, Humbertclaude H, Jounier S, Aude J, Keime C, Murvai J, Foglio M, Gut M, Gut I, Lathrop M, Soutourina J, Gerard M, Werner M,
Journal : Nucleic Acids Res
2012

Analyzing transcription factor occupancy during embryo development using ChIP-seq.

Author(s) : Ghavi-Helm Y, Furlong E,
Journal : Methods Mol Biol
2012

Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development.

Author(s) : Bonn S, Zinzen R, Girardot C, Gustafson E, Perez-Gonzalez A, Delhomme N, Ghavi-Helm Y, Wilczynski B, Riddell A, Furlong E,
Journal : Nat Genet
2012

Multigenome analysis identifies a worldwide distributed epidemic Legionella pneumophila clone that emerged within a highly diverse species.

Author(s) : Cazalet C, Jarraud S, Ghavi-Helm Y, Kunst F, Glaser P, Etienne J, Buchrieser C,
Journal : Genome Res
2008

Genome-wide location analysis reveals a role of TFIIS in RNA polymerase III transcription.

Author(s) : Ghavi-Helm Y, Michaut M, Acker J, Aude J, Thuriaux P, Werner M, Soutourina J,
Journal : Genes Dev
2008

Mediator-dependent recruitment of TFIIH modules in preinitiation complex.

Author(s) : Esnault C, Ghavi-Helm Y, Brun S, Soutourina J, Van Berkum N, Boschiero C, Holstege F, Werner M,
Journal : Mol Cell
2008

Mutations of RNA polymerase II activate key genes of the nucleoside triphosphate biosynthetic pathways.

Author(s) : Kwapisz M, Wery M, Despres D, Ghavi-Helm Y, Soutourina J, Thuriaux P, Lacroute F,
Journal : EMBO J
2008