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Zeb1 represses TCR signaling, promotes the proliferation of T cell progenitors and is essential for NK1.1+ T cell development

Author(s) : Zhang J, Wencker M, Marliac Q, Berton A, Hasan U, Schneider R, Laubreton D, Cherrier D, Mathieu A, Rey A, Jiang W, Caramel J, Genestier L, Marçais A, Marvel J, Ghavi-Helm Y, Walzer T,
Journal : Cell Mol Immunol
2020

3D genome organisation in Drosophila

Author(s) : Moretti C, Stevant I, Ghavi-Helm Y,
Journal : Briefings in Functional Genomics
2019

Functional consequences of chromosomal rearrangements on gene expression: not so deleterious after all?

Author(s) : Ghavi-Helm Y,
Journal : Journal of Molecular Biology
2019

Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression

Author(s) : Ghavi-Helm Y, Jankowski A, Meiers S, Viales R, Korbel J, Furlong E,
Journal : Nature Genetics
2019

Chromosome topology guides the Drosophila Dosage Compensation Complex for target gene activation

Author(s) : Schauer T, Ghavi-Helm Y, Sexton T, Albig C, Regnard C, Cavalli G, Furlong E, Becker P,
Journal : EMBO Rep
2017

Dual functionality of cis-regulatory elements as developmental enhancers and Polycomb response elements.

Author(s) : Erceg J, Pakozdi T, Marco-Ferreres R, Ghavi-Helm Y, Girardot C, Bracken A, Furlong E,
Journal : Genes Dev
2017

Corrigendum: Enhancer loops appear stable during development and are associated with paused polymerase.

Author(s) : Ghavi-Helm Y, Klein F, Pakozdi T, Ciglar L, Noordermeer D, Huber W, Furlong E,
Journal : Nature
2016

Chromatin Immunoprecipitation for Analyzing Transcription Factor Binding and Histone Modifications in Drosophila.

Author(s) : Ghavi-Helm Y, Zhao B, Furlong E,
Journal : Methods Mol Biol
2016

Identification and in silico modeling of enhancers reveals new features of the cardiac differentiation network.

Author(s) : Seyres D, Ghavi-Helm Y, Junion G, Taghli-Lamallem O, Guichard C, Roder L, Girardot C, Furlong E, Perrin L,
Journal : Development
2016

FourCSeq: analysis of 4C sequencing data.

Author(s) : Klein F, Pakozdi T, Anders S, Ghavi-Helm Y, Furlong E, Huber W,
Journal : Bioinformatics
2015

PHD and TFIIS-Like domains of the Bye1 transcription factor determine its multivalent genomic distribution.

Author(s) : Pinskaya M, Ghavi-Helm Y, Mariotte-Labarre S, Morillon A, Soutourina J, Werner M,
Journal : PLoS One
2014

Enhancer loops appear stable during development and are associated with paused polymerase.

Author(s) : Ghavi-Helm Y, Klein F, Pakozdi T, Ciglar L, Noordermeer D, Huber W, Furlong E,
Journal : Nature
2014

Genomic binding of Pol III transcription machinery and relationship with TFIIS transcription factor distribution in mouse embryonic stem cells.

Author(s) : Carriere L, Graziani S, Alibert O, Ghavi-Helm Y, Boussouar F, Humbertclaude H, Jounier S, Aude J, Keime C, Murvai J, Foglio M, Gut M, Gut I, Lathrop M, Soutourina J, Gerard M, Werner M,
Journal : Nucleic Acids Res
2012

Analyzing transcription factor occupancy during embryo development using ChIP-seq.

Author(s) : Ghavi-Helm Y, Furlong E,
Journal : Methods Mol Biol
2012

Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development.

Author(s) : Bonn S, Zinzen R, Girardot C, Gustafson E, Perez-Gonzalez A, Delhomme N, Ghavi-Helm Y, Wilczynski B, Riddell A, Furlong E,
Journal : Nat Genet
2012

Multigenome analysis identifies a worldwide distributed epidemic Legionella pneumophila clone that emerged within a highly diverse species.

Author(s) : Cazalet C, Jarraud S, Ghavi-Helm Y, Kunst F, Glaser P, Etienne J, Buchrieser C,
Journal : Genome Res
2008

Genome-wide location analysis reveals a role of TFIIS in RNA polymerase III transcription.

Author(s) : Ghavi-Helm Y, Michaut M, Acker J, Aude J, Thuriaux P, Werner M, Soutourina J,
Journal : Genes Dev
2008

Mediator-dependent recruitment of TFIIH modules in preinitiation complex.

Author(s) : Esnault C, Ghavi-Helm Y, Brun S, Soutourina J, Van Berkum N, Boschiero C, Holstege F, Werner M,
Journal : Mol Cell
2008

Mutations of RNA polymerase II activate key genes of the nucleoside triphosphate biosynthetic pathways.

Author(s) : Kwapisz M, Wery M, Despres D, Ghavi-Helm Y, Soutourina J, Thuriaux P, Lacroute F,
Journal : EMBO J
2008