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References to publications, sorted by year and author.

Allier, C, Hervé, L, Paviolo, C, Mandula, O, Cioni, O, Pierré, W, Andriani, F, Padmanabhan, K, and Morales, S (2022).
CNN-based cell analysis: from image to quantitative representation
Frontiers in Physics, Optics and Photonics, 9(Article 776805).

Cerutti, C, Zhang, L, Tribollet, V, Shi, JR, Brillet, R, Gillet, B, Hughes, S, Forcet, C, Shi, TL, and Vanacker, JM (2022).
Computational identification of new potential transcriptional partners of ERRα in breast cancer cells: specific partners for specific targets
Sci Rep, 12(1):3826.

Finet, C, Decaras, A, Rutkowska, M, Roux, P, Collaudin, S, Joncour, P, Viala, S, and Khila, A (2022).
Leg length and bristle density, both necessary for water surface locomotion, are genetically correlated in water striders
Proc Natl Acad Sci U S A, 119(9).

Shin, J, Paek, KY, Chikhaoui, L, Jung, S, Ponny, S, Suzuki, Y, Padmanabhan, K, and Richter, JD (2022).
Oppositional poly(A) tail length regulation by FMRP and CPEB1
RNA, 28(5):756–765.

Sugawara, K, Çevrim, C, and Averof, M (2022).
Tracking cell lineages in 3D by incremental deep learning
Elife, 11:e69380.

Tartour, K and Padmanabhan, K (2022).
The Clock Takes Shape—24 h Dynamics in Genome Topology
Frontiers in Cell and Developmental Biology, 9(Article 799971).

Tribollet, V, Cerutti, C, Géloën, A, Berger, E, De Mets, R, Balland, M, Courchet, J, Vanacker, JM, and Forcet, C (2022).
ERRα coordinates actin and focal adhesion dynamics
Cancer Gene Ther.

salamito, M, Nauroy, P, and Ruggiero, F (2021 ).
The collagen superfamily: everything you always wanted to know. F. Ruggiero (Ed). The collagen superfamily and collagenopathies
Biology of Extracellular Matrix - In press.

Barbier, J, Vaillant, C, Volff, JN, Brunet, FG, and Audit, B (2021).
Coupling between Sequence-Mediated Nucleosome Organization and Genome Evolution
Genes (Basel), 12(6).

Carnesecchi, J, Boumpas, P, van Nierop Y Sanchez, P, Domsch, K, Pinto, HD, Borges Pinto, P, and Lohmann, I (2021).
The Hox transcription factor Ultrabithorax binds RNA and regulates co-transcriptional splicing through an interplay with RNA polymerase II
Nucleic Acids Res.

Darnaud, M, De Vadder, F, Bogeat, P, Boucinha, L, Bulteau, AL, Bunescu, A, Couturier, C, Delgado, A, Dugua, H, Elie, C, Mathieu, A, Novotná, T, Ouattara, DA, Planel, S, Saliou, A, Šrůtková, D, Yansouni, J, Stecher, B, Schwarzer, M, Leulier, F, and Tamellini, A (2021).
A standardized gnotobiotic mouse model harboring a minimal 15-member mouse gut microbiota recapitulates SOPF/SPF phenotypes
Nat Commun, 12(1):6686.

De Vadder, F, Joly, A, and Leulier, F (2021).
Microbial and nutritional influence on endocrine control of growth
J Mol Endocrinol.

Dechaud, C, Miyake, S, Martinez-Bengochea, A, Schartl, M, Volff, JN, and Naville, M (2021).
Clustering of Sex-Biased Genes and Transposable Elements in the Genome of the Medaka Fish Oryzias latipes
Genome Biol Evol, 13(11).

Etchegaray, E, Naville, M, Volff, JN, and Haftek-Terreau, Z (2021).
Transposable element-derived sequences in vertebrate development
Mob DNA, 12(1):1.

Giraud, G, Paul, R, Duffraisse, M, Khan, S, Shashidhara, LS, and Merabet, S (2021).
Developmental Robustness: The Haltere Case in Drosophila
Front Cell Dev Biol, 9:713282.

Helmprobst, F, Kneitz, S, Klotz, B, Naville, M, Dechaud, C, Volff, JN, and Schartl, M (2021).
Differential expression of transposable elements in the medaka melanoma model
PLoS One, 16(10):e0251713.

Jacob, H, Besson, M, Oberhaensli, F, Taylor, A, Gillet, B, Hughes, S, Melvin, SD, Bustamante, P, Swarzenski, PW, Lecchini, D, and Metian, M (2021).
A multifaceted assessment of the effects of polyethylene microplastics on juvenile gilthead seabreams (Sparus aurata)
Aquat Toxicol, 241:106004.

Jia, Y, Bleicher, F, Reboulet, J, and Merabet, S (2021).
Bimolecular Fluorescence Complementation (BiFC) and Multiplexed Imaging of Protein-Protein Interactions in Human Living Cells
Methods Mol Biol, 2350:173–190.

Maurel, M, Montheil, T, Martin, J, Chaar, L, Guzman-Gonzalez, V, Couvet, M, Jacquet, T, Jia, T, Eymin, B, Parra, K, Dumy, P, Martinez, J, Ruggiero, F, Vaganay, E, Mehdi, A, Coll, JL, and Subra, G (2021).
Design of PEGylated Three Ligands Silica Nanoparticles for Multi-Receptor Targeting
Nanomaterials (Basel), 11(1).

Omarjee, O, Mathieu, AL, Quiniou, G, Moreews, M, Ainouze, M, Frachette, C, Melki, I, Dumaine, C, Gerfaud-Valentin, M, Duquesne, A, Kallinich, T, Tahir Turanli, E, Malcus, C, Viel, S, Pescarmona, R, Georgin-Lavialle, S, Jamilloux, Y, Larbre, JP, Sarrabay, G, Magnotti, F, Rice, GI, Bleicher, F, Reboulet, J, Merabet, S, Henry, T, Crow, YJ, Faure, M, Walzer, T, and Belot, A (2021).
LACC1 deficiency links juvenile arthritis with autophagy and metabolism in macrophages
J Exp Med, 218(3).

Parisot, N, Vargas-Chávez, C, Goubert, C, Baa-Puyoulet, P, Balmand, S, Beranger, L, Blanc, C, Bonnamour, A, Boulesteix, M, Burlet, N, Calevro, F, Callaerts, P, Chancy, T, Charles, H, Colella, S, Da Silva Barbosa, A, Dell'Aglio, E, Di Genova, A, Febvay, G, Gabaldón, T, Galvão Ferrarini, M, Gerber, A, Gillet, B, Hubley, R, Hughes, S, Jacquin-Joly, E, Maire, J, Marcet-Houben, M, Masson, F, Meslin, C, Montagné, N, Moya, A, Ribeiro de Vasconcelos, AT, Richard, G, Rosen, J, Sagot, MF, Smit, AFA, Storer, JM, Vincent-Monegat, C, Vallier, A, Vigneron, A, Zaidman-Rémy, A, Zamoum, W, Vieira, C, Rebollo, R, Latorre, A, and Heddi, A (2021).
The transposable element-rich genome of the cereal pest Sitophilus oryzae
BMC Biol, 19(1):241.

Paul, R, Giraud, G, Domsch, K, Duffraisse, M, Marmigère, F, Khan, S, Vanderperre, S, Lohmann, I, Stoks, R, Shashidhara, LS, and Merabet, S (2021).
Hox dosage contributes to flight appendage morphology in Drosophila
Nat Commun, 12(1):2892.

Rodrigues, JMDS, Crumière, AJJ, Mondragón-F, SP, Morales, I, Khila, A, and Moreira, FFF (2021).
Description of a new species and new records of Gerromorpha (Insecta: Hemiptera: Heteroptera) from Panama and Colombia
Zootaxa, 4958(1):zootaxa.4958.1.12.

Schwarzer, M, Tlaskalova-Hogenova, H, Leulier, F, and Schabussova, I (2021).
Editorial: Employing Experimental Gnotobiotic Models to Decipher the Host-Microbiota Cross-Talk in Health and Disease
Front Immunol, 12:729052.

Toubiana, W, Armisén, D, Dechaud, C, Arbore, R, and Khila, A (2021).
Impact of male trait exaggeration on sex-biased gene expression and genome architecture in a water strider
BMC Biol, 19(1):89.