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Bibliography

References to publications, sorted by year and author.

Guan, W, Bellemin, S, Bouchet, M, Venkatasubramanian, L, Guillermin, C, Laurençon, A, Kabir, C, Darnas, A, Godin, C, Urdy, S, Mann, R, and Enriquez, J (2022).
Post-transcriptional regulation of transcription factor codes in immature neurones drives neuronal diversity
Cell Reports, 39:110992.

Idoux, R, Bretaud, S, Berthier, C, Ruggiero, F, Jacquemond, V, and Allard, B (2022).
Superfast excitation-contraction coupling in adult zebrafish skeletal muscle fibers
J Gen Physiol, 154(9).

Malbouyres, M, Guiraud, A, Lefrançois, C, Salamito, M, Nauroy, P, Bernard, L, Sohm, F, Allard, B, and Ruggiero, F (2022).
The myotendinous junction marker collagen XXII enables zebrafish postural control learning and optimal swimming performance through its force transmission activity
Matrix Biol, 109:1-18.

Nikolopoulos, N, Matos, RC, Courtin, P, Ayala, I, Akherraz, H, Simorre, JP, Chapot-Chartier, MP, Leulier, F, Ravaud, S, and Grangeasse, C (2022).
DltC acts as an interaction hub for AcpS, DltA and DltB in the teichoic acid D-alanylation pathway of Lactiplantibacillus plantarum
Sci Rep, 12(1):13133.

Paris, M, Wolff, C, Patel, NH, and Averof, M (2022).
The crustacean model Parhyale hawaiensis
Curr Top Dev Biol, 147:199–230.

Shin, J, Paek, KY, Chikhaoui, L, Jung, S, Ponny, S, Suzuki, Y, Padmanabhan, K, and Richter, JD (2022).
Oppositional poly(A) tail length regulation by FMRP and CPEB1
RNA, 28(5):756–765.

Sinigaglia, C, Almazán, A, Lebel, M, Sémon, M, Gillet, B, Hughes, S, Edsinger, E, Averof, M, and Paris, M (2022).
Distinct gene expression dynamics in developing and regenerating crustacean limbs
Proc Natl Acad Sci U S A, 119(27):e2119297119.

Souquet, L, Guenser, P, Girard, C, Mazza, M, Rigo, M, and Goudemand, N (2022).
Temperature-driven heterochrony as a main evolutionary response to climate changes in conodonts
Proc Biol Sci, 289(1985):20220614.

Sugawara, K, Çevrim, C, and Averof, M (2022).
Tracking cell lineages in 3D by incremental deep learning
Elife, 11:e69380.

Tartour, K and Padmanabhan, K (2022).
The Clock Takes Shape—24 h Dynamics in Genome Topology
Frontiers in Cell and Developmental Biology, 9(Article 799971).

Tartour, K, Andriani, F, Folco, EG, Letkova, D, Schneider, R, Saidi, I, Sato, T, Welz, PS, Benitah, SA, Allier, C, and Padmanabhan, K (2022).
Mammalian PERIOD2 regulates H2A.Z incorporation in chromatin to orchestrate circadian negative feedback
Nat Struct Mol Biol.

Tribollet, V, Cerutti, C, Géloën, A, Berger, E, De Mets, R, Balland, M, Courchet, J, Vanacker, JM, and Forcet, C (2022).
ERRα coordinates actin and focal adhesion dynamics
Cancer Gene Ther.

Zekri, Y, Guyot, R, and Flamant, F (2022).
An Atlas of Thyroid Hormone Receptors' Target Genes in Mouse Tissues
Int J Mol Sci, 23(19).

Zekri, Y, Guyot, R, Suñer, IG, Canaple, L, Stein, AG, Petit, JV, Aubert, D, Richard, S, Flamant, F, and Gauthier, K (2022).
Brown adipocytes local response to thyroid hormone is required for adaptive thermogenesis in adult male mice
Elife, 11.

Salamito, M, Nauroy, P, and Ruggiero, F (2021 ).
The Collagen Superfamily: Everything You Always Wanted to Know. F. Ruggiero (Ed). The collagen superfamily and collagenopathies
Biology of Extracellular Matrix, Book chapter, Springer, 8.

Barbier, J, Vaillant, C, Volff, JN, Brunet, FG, and Audit, B (2021).
Coupling between Sequence-Mediated Nucleosome Organization and Genome Evolution
Genes (Basel), 12(6).

Darnaud, M, De Vadder, F, Bogeat, P, Boucinha, L, Bulteau, AL, Bunescu, A, Couturier, C, Delgado, A, Dugua, H, Elie, C, Mathieu, A, Novotná, T, Ouattara, DA, Planel, S, Saliou, A, Šrůtková, D, Yansouni, J, Stecher, B, Schwarzer, M, Leulier, F, and Tamellini, A (2021).
A standardized gnotobiotic mouse model harboring a minimal 15-member mouse gut microbiota recapitulates SOPF/SPF phenotypes
Nat Commun, 12(1):6686.

De Vadder, F, Joly, A, and Leulier, F (2021).
Microbial and nutritional influence on endocrine control of growth
J Mol Endocrinol.

Dechaud, C, Miyake, S, Martinez-Bengochea, A, Schartl, M, Volff, JN, and Naville, M (2021).
Clustering of Sex-Biased Genes and Transposable Elements in the Genome of the Medaka Fish Oryzias latipes
Genome Biol Evol, 13(11).

Etchegaray, E, Naville, M, Volff, JN, and Haftek-Terreau, Z (2021).
Transposable element-derived sequences in vertebrate development
Mob DNA, 12(1):1.

Giraud, G, Paul, R, Duffraisse, M, Khan, S, Shashidhara, LS, and Merabet, S (2021).
Developmental Robustness: The Haltere Case in Drosophila
Front Cell Dev Biol, 9:713282.

Helmprobst, F, Kneitz, S, Klotz, B, Naville, M, Dechaud, C, Volff, JN, and Schartl, M (2021).
Differential expression of transposable elements in the medaka melanoma model
PLoS One, 16(10):e0251713.

Jacob, H, Besson, M, Oberhaensli, F, Taylor, A, Gillet, B, Hughes, S, Melvin, SD, Bustamante, P, Swarzenski, PW, Lecchini, D, and Metian, M (2021).
A multifaceted assessment of the effects of polyethylene microplastics on juvenile gilthead seabreams (Sparus aurata)
Aquat Toxicol, 241:106004.

Jia, T, Jacquet, T, Dalonneau, F, Coudert, P, Vaganay, E, ritier, C, Vollaire, J, Josserand, V, Ruggiero, F, Coll, JL, and Eymin, B (2021).
FGF-2 promotes angiogenesis through a SRSF1/SRSF3/SRPK1-dependent axis that controls VEGFR1 splicing in endothelial cells
BMC Biol, 19(1):173.

Jia, Y, Bleicher, F, Reboulet, J, and Merabet, S (2021).
Bimolecular Fluorescence Complementation (BiFC) and Multiplexed Imaging of Protein-Protein Interactions in Human Living Cells
Methods Mol Biol, 2350:173–190.