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Bibliography

References to publications, sorted by year and author.

Panfilio, KA, Vargas Jentzsch, IM, Benoit, JB, Erezyilmaz, D, Suzuki, Y, Colella, S, Robertson, HM, Poelchau, MF, Waterhouse, RM, Ioannidis, P, Weirauch, MT, Hughes, DS, Murali, SC, Werren, JH, Jacobs, CG, Duncan, EJ, Armisén, D, Vreede, BM, Baa-Puyoulet, P, Berger, CS, Chang, C, Chao, H, Chen, MM, Chen, Y, Childers, CP, Chipman, AD, Cridge, AG, Crumière, AJ, Dearden, PK, Didion, EM, Dinh, H, doddapaneni, h, Dolan, A, Dugan-Perez, S, Extavour, CG, Febvay, G, Friedrich, M, Ginzburg, N, Han, Y, Heger, P, Horn, T, Hsiao, Y, Jennings, EC, Johnston, JS, Jones, TE, Jones, JW, Khila, A, Koelzer, S, Kovacova, V, Leask, M, Lee, SL, Lee, C, Lovegrove, MR, Lu, H, Lu, Y, Moore, PJ, Munoz-Torres, MC, Muzny, DM, Palli, SR, Parisot, N, Pick, L, Porter, M, Qu, J, Refki, PN, Richter, R, Rivera-Pomar, R, Rosendale, AJ, Roth, S, Sachs, L, Santos, ME, Seibert, J, Sghaier, E, Shukla, JN, Stancliffe, RJ, Tidswell, O, Traverso, L, van der Zee, M, Viala, S, Worley, KC, Zdobnov, EM, Gibbs, RA, and Richards, S (2017).
Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome
bioRxiv.

Pernelle, K, Imbert, L, Bosser, C, Auregan, JC, Cruel, M, Ogier, A, Jurdic, P, and Hoc, T (2017).
Microscale mechanical and mineral heterogeneity of human cortical bone governs osteoclast activity
Bone, 94:42-49.

Santos, ME, Le Bouquin, A, Crumiere, AJJ, and Khila, A (2017).
Taxon-restricted genes at the origin of a novel trait allowing access to a new environment
Science, 358(6361):386-390.

Sarkar, A, Volff, JN, and Vaury, C (2017).
piRNAs and their diverse roles: a transposable element-driven tactic for gene regulation?
FASEB J, 31(2):436-446.

Schauer, T, Ghavi-Helm, Y, Sexton, T, Albig, C, Regnard, C, Cavalli, G, Furlong, EE, and Becker, PB (2017).
Chromosome topology guides the Drosophila Dosage Compensation Complex for target gene activation
EMBO Rep.

Schwarzer, M, Srutkova, D, Hermanova, P, Leulier, F, Kozakova, H, and Schabussova, I (2017).
Diet Matters: Endotoxin in the Diet Impacts the Level of Allergic Sensitization in Germ-Free Mice
PLoS One, 12(1):e0167786.

Shamalnasab, M, Dhaoui, M, Thondamal, M, Harvald, EB, Faergeman, NJ, Aguilaniu, H, and Fabrizio, P (2017).
HIF-1-dependent regulation of lifespan in Caenorhabditis elegans by the acyl-CoA-binding protein MAA-1
Aging (Albany NY), 9(7):1745-1769.

Shiga, Y, Kato, Y, Aragane-Nomura, Y, Haraguchi, T, Saridaki, T, Watanabe, H, Iguchi, T, Yamagata, H, and Averof, M (2017).
Repeated co-option of a conserved gene regulatory module underpins the evolution of the crustacean carapace, insect wings and other flat outgrowths
bioRxiv.

Tefit, MA and Leulier, F (2017).
Lactobacillus plantarum favors the early emergence of fit and fertile adult Drosophila upon chronic undernutrition
J Exp Biol, 220(Pt 5):900-907.

Tefit, MA, Gillet, B, Joncour, P, Hughes, S, and Leulier, F (2017).
Stable association of a Drosophila-derived microbiota with its animal partner and the nutritional environment throughout a fly population's life cycle
J Insect Physiol.

Voldoire, E, Brunet, F, Naville, M, Volff, JN, and Galiana, D (2017).
Expansion by whole genome duplication and evolution of the sox gene family in teleost fish
PLoS One, 12(7):e0180936.

Widmann, P, Leu, M, Goudemand, N, Schaltegger, U, and Bucher, H (2017).
New high precision U-Pb calibration of the late Early-Triassic (Smithian-Spathian Boundary, South China)
In: EGU General Assembly Conference Abstracts, vol. 19, pp. 7218. EGU General Assembly Conference Abstracts.

Aguilaniu, H, Fabrizio, P, and Witting, M (2016).
The Role of Dafachronic Acid Signaling in Development and Longevity in Caenorhabditis elegans: Digging Deeper Using Cutting-Edge Analytical Chemistry
Front Endocrinol (Lausanne), 7:12.

Alwes, F, Enjolras, C, and Averof, M (2016).
Live imaging reveals the progenitors and cell dynamics of limb regeneration.
Elife, 5.

Arbogast, P, Flamant, F, Godement, P, Glosmann, M, and Peichl, L (2016).
Thyroid Hormone Signaling in the Mouse Retina
PLoS One, 11(12):e0168003.

Benoit, JB, Adelman, ZN, Reinhardt, K, Dolan, A, Poelchau, M, Jennings, EC, Szuter, EM, Hagan, RW, Gujar, H, Shukla, JN, Zhu, F, Mohan, M, Nelson, DR, Rosendale, AJ, Derst, C, Resnik, V, Wernig, S, Menegazzi, P, Wegener, C, Peschel, N, Hendershot, JM, Blenau, W, Predel, R, Johnston, PR, Ioannidis, P, Waterhouse, RM, Nauen, R, Schorn, C, Ott, MC, Maiwald, F, Johnston, JS, Gondhalekar, AD, Scharf, ME, Peterson, BF, Raje, KR, Hottel, BA, Armisen, D, Crumiere, AJ, Refki, PN, Santos, ME, Sghaier, E, Viala, S, Khila, A, Ahn, SJ, Childers, C, Lee, CY, Lin, H, Hughes, DS, Duncan, EJ, Murali, SC, Qu, J, Dugan, S, Lee, SL, Chao, H, Dinh, H, Han, Y, Doddapaneni, H, Worley, KC, Muzny, DM, Wheeler, D, Panfilio, KA, Vargas Jentzsch, IM, Vargo, EL, Booth, W, Friedrich, M, Weirauch, MT, Anderson, MA, Jones, JW, Mittapalli, O, Zhao, C, Zhou, JJ, Evans, JD, Attardo, GM, Robertson, HM, Zdobnov, EM, Ribeiro, JM, Gibbs, RA, Werren, JH, Palli, SR, Schal, C, and Richards, S (2016).
Unique features of a global human ectoparasite identified through sequencing of the bed bug genome
Nat Commun, 7:10165.

Bondanese, VP, Lamboux, A, Simon, M, Lafont, JE, Albalat, E, Pichat, S, Vanacker, JM, Telouk, P, Balter, V, Oger, P, and Albarede, F (2016).
Hypoxia induces copper stable isotope fractionation in hepatocellular carcinoma, in a HIF-independent manner
Metallomics, 8(11):1177-1184.

Braasch, I, Gehrke, AR, Smith, JJ, Kawasaki, K, Manousaki, T, Pasquier, J, Amores, A, Desvignes, T, Batzel, P, Catchen, J, Berlin, AM, Campbell, MS, Barrell, D, Martin, KJ, Mulley, JF, Ravi, V, Lee, AP, Nakamura, T, Chalopin, D, Fan, S, Wcisel, D, Canestro, C, Sydes, J, Beaudry, FE, Sun, Y, Hertel, J, Beam, MJ, Fasold, M, Ishiyama, M, Johnson, J, Kehr, S, Lara, M, Letaw, JH, Litman, GW, Litman, RT, Mikami, M, Ota, T, Saha, NR, Williams, L, Stadler, PF, Wang, H, Taylor, JS, Fontenot, Q, Ferrara, A, Searle, SM, Aken, B, Yandell, M, Schneider, I, Yoder, JA, Volff, JN, Meyer, A, Amemiya, CT, Venkatesh, B, Holland, PW, Guiguen, Y, Bobe, J, Shubin, NH, Di Palma, F, Alfoldi, J, Lindblad-Toh, K, and Postlethwait, JH (2016).
The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons
Nat Genet, 48(4):427-37.

Brosse, M, Bucher, H, and Goudemand, N (2016).
Quantitative biochronology of the Permian-Triassic boundary in South China based on conodont unitary associations
Earth-Science Reviews, 155:153-171.

Brunet, FG, Volff, JN, and Schartl, M (2016).
Whole Genome Duplications Shaped the Receptor Tyrosine Kinase Repertoire of Jawed Vertebrates
Genome Biol Evol, 8(5):1600-13.

Carnesecchi, J and Vanacker, JM (2016).
Estrogen-Related Receptors and the control of bone cell fate
Mol Cell Endocrinol, 432:37-43.

Chassaing, O, Desse-Berset, N, Hänni, C, Hughes, S, and Berrebi, P (2016).
Phylogeography of the European sturgeon (Acipenser sturio): A critically endangered species
Mol Phylogenet Evol, 94(Pt A):346–357.

Crumiere, AJJ, Santos, ME, Semon, M, Armisen, D, Moreira, FFF, and Khila, A (2016).
Diversity in Morphology and Locomotory Behavior Is Associated with Niche Expansion in the Semi-aquatic Bugs
Curr Biol, 26(24):3336-3342.

Finan, B, Clemmensen, C, Zhu, Z, Stemmer, K, Gauthier, K, Muller, L, De Angelis, M, Moreth, K, Neff, F, Perez-Tilve, D, Fischer, K, Lutter, D, Sanchez-Garrido, MA, Liu, P, Tuckermann, J, Malehmir, M, Healy, ME, Weber, A, Heikenwalder, M, Jastroch, M, Kleinert, M, Jall, S, Brandt, S, Flamant, F, Schramm, KW, Biebermann, H, Doring, Y, Weber, C, Habegger, KM, Keuper, M, Gelfanov, V, Liu, F, Kohrle, J, Rozman, J, Fuchs, H, Gailus-Durner, V, Hrabe de Angelis, M, Hofmann, SM, Yang, B, Tschop, MH, DiMarchi, R, and Muller, TD (2016).
Chemical Hybridization of Glucagon and Thyroid Hormone Optimizes Therapeutic Impact for Metabolic Disease
Cell, 167(3):843-857 e14.

Flamant, F (2016).
Futures Challenges in Thyroid Hormone Signaling Research
Front Endocrinol (Lausanne), 7:58.