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Bibliography

References to publications, sorted by year and author.

Frantz, LA, Mullin, VE, Pionnier-Capitan, M, Lebrasseur, O, Ollivier, M, Perri, A, Linderholm, A, Mattiangeli, V, Teasdale, MD, Dimopoulos, EA, Tresset, A, Duffraisse, M, McCormick, F, Bartosiewicz, L, Gál, E, Nyerges, EA, Sablin, MV, Bréhard, S, Mashkour, M, Bălăşescu, A, Gillet, B, Hughes, S, Chassaing, O, Hitte, C, Vigne, JD, Dobney, K, Hänni, C, Bradley, DG, and Larson, G (2016).
Genomic and archaeological evidence suggest a dual origin of domestic dogs
Science, 352(6290):1228–1231.

Fraune, J, Brochier-Armanet, C, Alsheimer, M, Volff, JN, Schucker, K, and Benavente, R (2016).
Evolutionary history of the mammalian synaptonemal complex
Chromosoma, 125(3):355-60.

Ghavi-Helm, Y, Klein, FA, Pakozdi, T, Ciglar, L, Noordermeer, D, Huber, W, and Furlong, EEM (2016).
Corrigendum: Enhancer loops appear stable during development and are associated with paused polymerase.
Nature, 537(7619):254.

Ghavi-Helm, Y, Zhao, B, and Furlong, EEM (2016).
Chromatin Immunoprecipitation for Analyzing Transcription Factor Binding and Histone Modifications in Drosophila.
Methods Mol Biol, 1478:263-277.

Grillo, M, Konstantinides, N, and Averof, M (2016).
Old questions, new models: unraveling complex organ regeneration with new experimental approaches.
Curr Opin Genet Dev, 40:23-31.

Griveau, A, Devailly, G, Eberst, L, Navaratnam, N, Le Calve, B, Ferrand, M, Faull, P, Augert, A, Dante, R, Vanacker, JM, Vindrieux, D, and Bernard, D (2016).
The PLA2R1-JAK2 pathway upregulates ERRalpha and its mitochondrial program to exert tumor-suppressive action
Oncogene, 35(38):5033-42.

Guillon, E, Bretaud, S, and Ruggiero, F (2016).
Slow Muscle Precursors Lay Down a Collagen XV Matrix Fingerprint to Guide Motor Axon Navigation
J Neurosci, 36(9):2663-76.

Gutierrez-Mazariegos, J, Nadendla, EK, Studer, RA, Alvarez, S, de Lera, AR, Kuraku, S, Bourguet, W, Schubert, M, and Laudet, V (2016).
Evolutionary diversification of retinoic acid receptor ligand-binding pocket structure by molecular tinkering
R Soc Open Sci, 3(3):150484.

Holzer, G, Morishita, Y, Fini, JB, Lorin, T, Gillet, B, Hughes, S, Tohme, M, Deleage, G, Demeneix, B, Arvan, P, and Laudet, V (2016).
Thyroglobulin Represents a Novel Molecular Architecture of Vertebrates
J Biol Chem, 291(32):16553-66.

Kao, D, Lai, AG, Stamataki, E, Rosic, S, Konstantinides, N, Jarvis, E, Di Donfrancesco, A, Pouchkina-Stancheva, N, Semon, M, Grillo, M, Bruce, H, Kumar, S, Siwanowicz, I, Le, A, Lemire, A, Eisen, MB, Extavour, C, Browne, WE, Wolff, C, Averof, M, Patel, NH, Sarkies, P, Pavlopoulos, A, and Aboobaker, A (2016).
The genome of the crustacean Parhyale hawaiensis, a model for animal development, regeneration, immunity and lignocellulose digestion.
Elife, 5.

Lepetit, D, Gillet, B, Hughes, S, Kraaijeveld, K, and Varaldi, J (2016).
Genome Sequencing of the Behavior Manipulating Virus LbFV Reveals a Possible New Virus Family
Genome Biol Evol, 8(12):3718-3739.

Li, L, Bonneton, F, Tohme, M, Bernard, L, Chen, XY, and Laudet, V (2016).
In Vivo Screening Using Transgenic Zebrafish Embryos Reveals New Effects of HDAC Inhibitors Trichostatin A and Valproic Acid on Organogenesis
PLoS One, 11(2):e0149497.

Markossian, S and Flamant, F (2016).
CRISPR/Cas9: a breakthrough in generating mouse models for endocrinologists
J Mol Endocrinol, 57(2):R81-92.

Martino, ME, Bayjanov, JR, Caffrey, BE, Wels, M, Joncour, P, Hughes, S, Gillet, B, Kleerebezem, M, van Hijum, SA, and Leulier, F (2016).
Nomadic lifestyle of Lactobacillus plantarum revealed by comparative genomics of 54 strains isolated from different habitats
Environ Microbiol, 18(12):4974-4989.

Merabet, S and Mann, RS (2016).
To Be Specific or Not: The Critical Relationship Between Hox And TALE Proteins
Trends Genet, 32(6):334-47.

Naville, M and Volff, JN (2016).
Endogenous Retroviruses in Fish Genomes: From Relics of Past Infections to Evolutionary Innovations?
Front Microbiol, 7:1197.

Naville, M, Warren, IA, Haftek-Terreau, Z, Chalopin, D, Brunet, F, Levin, P, Galiana, D, and Volff, JN (2016).
Not so bad after all: retroviruses and long terminal repeat retrotransposons as a source of new genes in vertebrates
Clin Microbiol Infect, 22(4):312-323.

Richard, S, Aguilera, N, Thevenet, M, Dkhissi-Benyahya, O, and Flamant, F (2016).
Neuronal expression of a thyroid hormone receptor alpha mutation alters mouse behaviour
Behav Brain Res, 321:18-27.

Roulland, Y, Ouararhni, K, Naidenov, M, Ramos, L, Shuaib, M, Syed, SH, Lone, IN, Boopathi, R, Fontaine, E, Papai, G, Tachiwana, H, Gautier, T, Skoufias, D, Padmanabhan, K, Bednar, J, Kurumizaka, H, Schultz, P, Angelov, D, Hamiche, A, and Dimitrov, S (2016).
The Flexible Ends of CENP-A Nucleosome Are Required for Mitotic Fidelity
Mol Cell, 63(4):674-85.

Schwarzer, M, Makki, K, Storelli, G, Machuca-Gayet, I, Srutkova, D, Hermanova, P, Martino, ME, Balmand, S, Hudcovic, T, Heddi, A, Rieusset, J, Kozakova, H, Vidal, H, and Leulier, F (2016).
Lactobacillus plantarum strain maintains growth of infant mice during chronic undernutrition
Science, 351(6275):854-7.

Seyres, D, Ghavi-Helm, Y, Junion, G, Taghli-Lamallem, O, Guichard, C, Roder, L, Girardot, C, Furlong, EEM, and Perrin, L (2016).
Identification and in silico modeling of enhancers reveals new features of the cardiac differentiation network.
Development, 143(23):4533-4542.

Shen, Y, Chalopin, D, Garcia, T, Boswell, M, Boswell, W, Shiryev, SA, Agarwala, R, Volff, JN, Postlethwait, JH, Schartl, M, Minx, P, Warren, WC, and Walter, RB (2016).
X. couchianus and X. hellerii genome models provide genomic variation insight among Xiphophorus species
BMC Genomics, 17:37.

Storelli, G and Leulier, F (2016).
[Juvenile growth, chronic undernutrition and microbiota: the growth-promoting effect of specific Lactobacilli strains is conserved from fruit flies to mice]
Med Sci (Paris), 32(11):925-929.

Strigini, M and Leulier, F (2016).
The role of the microbial environment in Drosophila post-embryonic development
Dev Comp Immunol, 64:39-52.

Toubiana, W and Khila, A (2016).
The benefits of expanding studies of trait exaggeration to hemimetabolous insects and beyond morphology
Curr Opin Genet Dev, 39:14-20.