Publications

Semaglutide interferes with postnatal growth in a diet-dependent manner: Author(s) : Joly A, Rebiffé L, Dusabyinema Y, Dellinger J, Leulier F, De Vadder F,; Journal : bioRxiv; 2024
Identification and quantification of transposable element transcripts using Long-Read RNA-seq in Drosophila germline tissues: Author(s) : Rebollo R, Gerenton P, Cumunel E, Mary A, Sabot F, Burlet N, Gillet B, Hughes S, S. Oliveira D, Goubert C, Fablet M, Vieira C, Lacroix V,; Journal : Peer Community J.; 2024
Larval microbiota primes the Drosophila adult gustatory response: Author(s) : Montanari M, Manière G, Berthelot-Grosjean M, Dusabyinema Y, Gillet B, Grosjean Y, Kurz C, Royet J,; Journal : Nat. Commun.; 2024
Dual topologies of myotomal collagen XV and Tenascin C act in concert to guide and shape developing motor axons: Author(s) : Nemoz-Billet L, Balland M, Gilquin L, Gillet B, vant I, Guillon E, Hughes S, Carpentier G, Vaganay E, Sohm F, Misiak V, Gonzalez-Melo M, Koch M, Ghavi-Helm Y, Bretaud S, Ruggiero F,; Journal : Proc Natl Acad Sci U S A; 2024
NRF2 shortage in human skin fibroblasts dysregulates matrisome gene expression and affects collagen fibrillogenesis: Author(s) : Salamito M, Gillet B, Syx D, Vaganay E, Malbouyres M, Cerutti C, Tissot N, Exbrayat-Héritier C, Perez P, Jones C, Hughes S, Malfait F, Haydont V, Jäger S, Ruggiero F,; Journal : J. Invest. Dermatol.; 2023
Coordination of host and endosymbiont gene expression governs endosymbiont growth and elimination in the cereal weevil Sitophilus spp: Author(s) : Ferrarini M, Vallier A, Vincent-Monégat C, Dell'Aglio E, Gillet B, Hughes S, Hurtado O, Condemine G, Zaidman-Rémy A, Rebollo R, Parisot N, Heddi A,; Journal : Microbiome; 2023
Chronological aging impacts abundance, function and microRNA content of extracellular vesicles produced by human epidermal keratinocytes: Author(s) : Nedachi T, Bonod C, Rorteau J, Chinoune W, Ishiuchi Y, Hughes S, Gillet B, Bechetoille N, Sigaudo-Roussel D, Lamartine J,; Journal : Aging (Albany NY); 2023
Papillary and reticular fibroblasts generate distinct microenvironments that differentially impact angiogenesis: Author(s) : Mauroux A, Joncour P, Brassard-Jollive N, Bacar H, Gillet B, Hughes S, Ardidie-Robouant C, Marchand L, Liabotis A, Mailly P, Monnot C, Germain S, Bordes S, Closs B, Ruggiero F, Muller L,; Journal : Acta Biomater.; 2023
Intestinal GCN2 controls Drosophila systemic growth in response to Lactiplantibacillus plantarum symbiotic cues encoded by r/tRNA operons: Author(s) : Grenier T, Consuegra J, Ferrarini M, Akherraz H, Bai L, Dusabyinema Y, Rahioui I, Da Silva P, Gillet B, Hughes S, Ramos C, Matos R, Leulier F,; Journal : Elife; 2023
New insights from short and long reads sequencing to explore cytochrome b variants in Plasmopara viticola populations collected from vineyards and related to resistance to complex III inhibitors: Author(s) : Cherrad S, Gillet B, Dellinger J, Bellaton L, Roux P, Hernandez C, Steva H, Perrier L, Vacher S, Hughes S,; Journal : PLoS One; 2023
A live cell protein complementation assay for ORFeome-wide probing of human HOX interactomes: Author(s) : Jia Y, Reboulet J, Gillet B, Hughes S, Forcet C, Tribollet V, Hajj Sleiman N, Kundlacz C, Vanacker J, Bleicher F, Merabet S,; Journal : Cells; 2023
Efficient compartmentalization in insect bacteriomes protects symbiotic bacteria from host immune system: Author(s) : Ferrarini M, Dell'Aglio E, Vallier A, Balmand S, Vincent-Monégat C, Hughes S, Gillet B, Parisot N, Zaidman-Rémy A, Vieira C, Heddi A, Rebollo R,; Journal : Microbiome; 2022
Distinct gene expression dynamics in developing and regenerating crustacean limbs: Author(s) : Sinigaglia C, Almazán A, Lebel M, Sémon M, Gillet B, Hughes S, Edsinger E, Averof M, Paris M,; Journal : Proc. Natl. Acad. Sci. U. S. A.; 2022
Computational identification of new potential transcriptional partners of ERRα in breast cancer cells: specific partners for specific targets: Author(s) : Cerutti C, Zhang L, Tribollet V, Shi J, Brillet R, Gillet B, Hughes S, Forcet C, Shi T, Vanacker J,; Journal : Sci. Rep.; 2022
The transposable element-rich genome of the cereal pest Sitophilus oryzae: Author(s) : Parisot N, Vargas-Chávez C, Goubert C, Baa-Puyoulet P, Balmand S, Beranger L, Blanc C, Bonnamour A, Boulesteix M, Burlet N, Calevro F, Callaerts P, Chancy T, Charles H, Colella S, Da Silva Barbosa A, Dell'Aglio E, Di Genova A, Febvay G, Gabaldón T, Galvão Ferrarini M, Gerber A, Gillet B, Hubley R, Hughes S, Jacquin-Joly E, Maire J, Marcet-Houben M, Masson F, Meslin C, Montagné N, Moya A, Ribeiro de Vasconcelos A, Richard G, Rosen J, Sagot M, Smit A, Storer J, Vincent-Monegat C, Vallier A, Vigneron A, Zaidman-Rémy A, Zamoum W, Vieira C, Rebollo R, Latorre A, Heddi A,; Journal : BMC Biol.; 2021
A multifaceted assessment of the effects of polyethylene microplastics on juvenile gilthead seabreams (Sparus aurata): Author(s) : Jacob H, Besson M, Oberhaensli F, Taylor A, Gillet B, Hughes S, Melvin S, Bustamante P, Swarzenski P, Lecchini D, Metian M,; Journal : Aquat Toxicol; 2021
The transposable element-rich genome of the cereal pest Sitophilus oryzae: Author(s) : Parisot N, Vargas-Chávez C, Goubert C, Baa-Puyoulet P, Balmand S, Beranger L, Blanc C, Bonnamour A, Boulesteix M, Burlet N, Calevro F, Callaerts P, Chancy T, Charles H, Colella S, Da Silva Barbosa A, Dell'Aglio E, Di Genova A, Febvay G, Gabaldón T, Galvão Ferrarini M, Gerber A, Gillet B, Hubley R, Hughes S, Jacquin-Joly E, Maire J, Marcet-Houben M, Masson F, Meslin C, Montagné N, Moya A, Ribeiro de Vasconcelos A, Richard G, Rosen J, Sagot M, Smit A, Storer J, Vincent-Monegat C, Vallier A, Vigneron A, Zaidman-Rémy A, Zamoum W, Vieira C, Rebollo R, Latorre A, Heddi A,; Journal : BMC Biol; 2021
Spatial and morphological reorganization of endosymbiosis during metamorphosis accommodates adult metabolic requirements in a weevil: Author(s) : Maire J, Parisot N, Galvao Ferrarini M, Vallier A, Gillet B, Hughes S, Balmand S, Vincent-Monégat C, Zaidman-Rémy A, Heddi A,; Journal : Proc Natl Acad Sci U S A; 2020
Bacterial diversity on an abandoned, industrial wasteland contaminated by polychlorinated biphenyls, dioxins, furans and trace metals: Author(s) : Girardot F, Allégra S, Pfendler S, Conord C, Rey C, Gillet B, Hughes S, Bouchardon A, Hua A, Paran F, Bouchardon J, Faure O,; Journal : Sci Total Environ; 2020
Gene profile of zebrafish fin regeneration offers clues to kinetics, organization and biomechanics of basement membrane: Author(s) : Nauroy P, Guiraud A, Chlasta J, Malbouyres M, Gillet B, Hughes S, Lambert E, Ruggiero F,; Journal : Matrix Biol; 2019
A genome-wide screen identifies IRF2 as a key regulator of caspase-4 in human cells: Author(s) : Benaoudia S, Martin A, Puig Gamez M, Gay G, Lagrange B, Cornut M, Krasnykov K, Claude J, Bourgeois C, Hughes S, Gillet B, Allatif O, Corbin A, Ricci R, Henry T,; Journal : EMBO Rep; 2019
Microsatellite diversity of a critically endangered sturgeon, Acipenser sturio L. 1758, assessed from museum and archaeological tissue remains: Author(s) : Chassaing O, Desse-Berset N, Hänni C, Hughes S, Berrebi P,; Journal : Journal of Biogeography; 2018
The in-silico zebrafish matrisome: A new tool to study extracellular matrix gene and protein functions: Author(s) : Nauroy P, Hughes S, Naba A, Ruggiero F,; Journal : Matrix Biol; 2018
Bacterial Adaptation to the Host's Diet Is a Key Evolutionary Force Shaping Drosophila-Lactobacillus Symbiosis: Author(s) : Martino M, Joncour P, Leenay R, Gervais H, Shah M, Hughes S, Gillet B, Beisel C, Leulier F,; Journal : Cell Host Microbe; 2018
Direct fishing and eDNA metabarcoding for biomonitoring during a 3-year survey significantly improves number of fish detected around a South East Asian reservoir: Author(s) : Gillet B, Cottet M, Destanque T, Kue K, Descloux S, Chanudet V, Hughes S,; Journal : PLoS One; 2018
D-Alanylation of teichoic acids contributes to Lactobacillus plantarum-mediated Drosophila growth during chronic undernutrition: Author(s) : Matos R, Schwarzer M, Gervais H, Courtin P, Joncour P, Gillet B, Ma D, Bulteau A, Martino M, Hughes S, Chapot-Chartier M, Leulier F,; Journal : Nat Microbiol; 2017
Complete Genome Sequence of the Hyperthermophilic Piezophilic Archaeon Pyrococcus kukulkanii NCB100 Isolated from the Rebecca's Roost Hydrothermal Vent in the Guaymas Basin: Author(s) : Oger P, Callac N, Oger-Desfeux C, Hughes S, Gillet B, Jebbar M, Godfroy A,; Journal : Genome Announc; 2017
Stable association of a Drosophila-derived microbiota with its animal partner and the nutritional environment throughout a fly population's life cycle: Author(s) : Tefit M, Gillet B, Joncour P, Hughes S, Leulier F,; Journal : J Insect Physiol; 2017
Fish larval recruitment to reefs is a thyroid hormone-mediated metamorphosis sensitive to the pesticide chlorpyrifos: Author(s) : Holzer G, Besson M, Lambert A, François L, Barth P, Gillet B, Hughes S, Piganeau G, Leulier F, Viriot L, Lecchini D, Laudet V,; Journal : Elife; 2017
Thyroglobulin Represents a Novel Molecular Architecture of Vertebrates: Author(s) : Holzer G, Morishita Y, Fini J, Lorin T, Gillet B, Hughes S, Tohme M, Deleage G, Demeneix B, Arvan P, Laudet V,; Journal : J Biol Chem; 2016
Genome Sequencing of the Behavior Manipulating Virus LbFV Reveals a Possible New Virus Family: Author(s) : Lepetit D, Gillet B, Hughes S, Kraaijeveld K, Varaldi J,; Journal : Genome Biol Evol; 2016
Nomadic lifestyle of Lactobacillus plantarum revealed by comparative genomics of 54 strains isolated from different habitats: Author(s) : Martino M, Bayjanov J, Caffrey B, Wels M, Joncour P, Hughes S, Gillet B, Kleerebezem M, van Hijum S, Leulier F,; Journal : Environ Microbiol; 2016
Phylogeography of the European sturgeon (Acipenser sturio): A critically endangered species: Author(s) : Chassaing O, Desse-Berset N, Hänni C, Hughes S, Berrebi P,; Journal : Mol Phylogenet Evol; 2016
Genomic and archaeological evidence suggest a dual origin of domestic dogs: Author(s) : Frantz L, Mullin V, Pionnier-Capitan M, Lebrasseur O, Ollivier M, Perri A, Linderholm A, Mattiangeli V, Teasdale M, Dimopoulos E, Tresset A, Duffraisse M, McCormick F, Bartosiewicz L, Gál E, Nyerges E, Sablin M, Bréhard S, Mashkour M, Bălăşescu A, Gillet B, Hughes S, Chassaing O, Hitte C, Vigne J, Dobney K, Hänni C, Bradley D, Larson G,; Journal : Science; 2016
Nearly Complete Genome Sequence of Lactobacillus plantarum Strain NIZO2877: Author(s) : Martino M, Bayjanov J, Joncour P, Hughes S, Gillet B, Kleerebezem M, Siezen R, van Hijum S, Leulier F,; Journal : Genome Announc; 2015
Resequencing of the Lactobacillus plantarum Strain WJL Genome: Author(s) : Martino M, Bayjanov J, Joncour P, Hughes S, Gillet B, Kleerebezem M, Siezen R, van Hijum S, Leulier F,; Journal : Genome Announc; 2015
Toxicogenomic analysis of the ability of brominated flame retardants TBBPA and BDE-209 to disrupt thyroid hormone signaling in neural cells: Author(s) : Guyot R, Chatonnet F, Gillet B, Hughes S, Flamant F,; Journal : Toxicology; 2014
Retinoic acid receptor subtype-specific transcriptotypes in the early zebrafish embryo: Author(s) : Samarut E, Gaudin C, Hughes S, Gillet B, de Bernard S, Jouve P, Buffat L, Allot A, Lecompte O, Berekelya L, Rochette-Egly C, Laudet V,; Journal : Mol Endocrinol; 2014

Sections

Publications

Semaglutide interferes with postnatal growth in a diet-dependent manner

Identification and quantification of transposable element transcripts using Long-Read RNA-seq in Drosophila germline tissues

Larval microbiota primes the Drosophila adult gustatory response

Dual topologies of myotomal collagen XV and Tenascin C act in concert to guide and shape developing motor axons

NRF2 shortage in human skin fibroblasts dysregulates matrisome gene expression and affects collagen fibrillogenesis

Coordination of host and endosymbiont gene expression governs endosymbiont growth and elimination in the cereal weevil Sitophilus spp

Chronological aging impacts abundance, function and microRNA content of extracellular vesicles produced by human epidermal keratinocytes

Papillary and reticular fibroblasts generate distinct microenvironments that differentially impact angiogenesis

Intestinal GCN2 controls Drosophila systemic growth in response to Lactiplantibacillus plantarum symbiotic cues encoded by r/tRNA operons

New insights from short and long reads sequencing to explore cytochrome b variants in Plasmopara viticola populations collected from vineyards and related to resistance to complex III inhibitors

A live cell protein complementation assay for ORFeome-wide probing of human HOX interactomes

Efficient compartmentalization in insect bacteriomes protects symbiotic bacteria from host immune system

Distinct gene expression dynamics in developing and regenerating crustacean limbs

Computational identification of new potential transcriptional partners of ERRα in breast cancer cells: specific partners for specific targets

The transposable element-rich genome of the cereal pest Sitophilus oryzae

A multifaceted assessment of the effects of polyethylene microplastics on juvenile gilthead seabreams (Sparus aurata)

The transposable element-rich genome of the cereal pest Sitophilus oryzae

Spatial and morphological reorganization of endosymbiosis during metamorphosis accommodates adult metabolic requirements in a weevil

Bacterial diversity on an abandoned, industrial wasteland contaminated by polychlorinated biphenyls, dioxins, furans and trace metals

Gene profile of zebrafish fin regeneration offers clues to kinetics, organization and biomechanics of basement membrane

A genome-wide screen identifies IRF2 as a key regulator of caspase-4 in human cells

Microsatellite diversity of a critically endangered sturgeon, Acipenser sturio L. 1758, assessed from museum and archaeological tissue remains

The in-silico zebrafish matrisome: A new tool to study extracellular matrix gene and protein functions

Bacterial Adaptation to the Host's Diet Is a Key Evolutionary Force Shaping Drosophila-Lactobacillus Symbiosis

Direct fishing and eDNA metabarcoding for biomonitoring during a 3-year survey significantly improves number of fish detected around a South East Asian reservoir

D-Alanylation of teichoic acids contributes to Lactobacillus plantarum-mediated Drosophila growth during chronic undernutrition

Complete Genome Sequence of the Hyperthermophilic Piezophilic Archaeon Pyrococcus kukulkanii NCB100 Isolated from the Rebecca's Roost Hydrothermal Vent in the Guaymas Basin

Stable association of a Drosophila-derived microbiota with its animal partner and the nutritional environment throughout a fly population's life cycle

Fish larval recruitment to reefs is a thyroid hormone-mediated metamorphosis sensitive to the pesticide chlorpyrifos

Thyroglobulin Represents a Novel Molecular Architecture of Vertebrates

Genome Sequencing of the Behavior Manipulating Virus LbFV Reveals a Possible New Virus Family

Nomadic lifestyle of Lactobacillus plantarum revealed by comparative genomics of 54 strains isolated from different habitats

Phylogeography of the European sturgeon (Acipenser sturio): A critically endangered species

Genomic and archaeological evidence suggest a dual origin of domestic dogs

Nearly Complete Genome Sequence of Lactobacillus plantarum Strain NIZO2877

Resequencing of the Lactobacillus plantarum Strain WJL Genome

Toxicogenomic analysis of the ability of brominated flame retardants TBBPA and BDE-209 to disrupt thyroid hormone signaling in neural cells

Retinoic acid receptor subtype-specific transcriptotypes in the early zebrafish embryo

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